6VMC | pdb_00006vmc

T4H2 T cell receptor bound to HLA-A2 presenting gp100T2L peptide (ILDQVPFSV)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]e6vmcB1 A: a/b three-layered sandwichesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF:ECOD (v294.1)
C [auth A]e6vmcA1 A: a/b three-layered sandwichesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF:ECOD (v294.1)
B [auth E]e6vmcE1 A: a/b three-layered sandwichesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF:ECOD (v294.1)
A [auth D]e6vmcD1 A: a/b three-layered sandwichesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF:ECOD (v294.1)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
D [auth B]MH1 HLA-A*0201 B2M Homo sapiens (human) B2M*01, B2M*02 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)
C [auth A]MH1 HLA-A*0201 I-ALPHA Homo sapiens (human) HLA-A*0201, HLA-A*0203, HLA-A*0204, HLA-A*0207, HLA-A*0209, HLA-A*0212, HLA-A*0213, HLA-A*0216, HLA-A*0217, HLA-A*0218, HLA-A*0222, HLA-A*0224, HLA-A*0226, HLA-A*0233, HLA-A*0266, HLA-A*0289, HLA-A*0268, HLA-A*0265, HLA-A*0277, HLA-A*0260, HLA-A*9232, HLA-A*9234, HLA-A*9235 G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202611-0)
B [auth E]TR T4H2 TR-BETA-2 Homo sapiens (human) TRBV19*01, TRBJ2-7*01, TRBC2*01, TRBC2*02 V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 TR TR-ALPHA_BETA-2 IMGT (202611-0)
A [auth D]TR T4H2 TR-ALPHA Homo sapiens (human) TRAV12-2*02, TRAJ49*01, TRAC*01 V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA TR TR-ALPHA_BETA-2 IMGT (202611-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth B]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
C [auth A]PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
C [auth A]PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth C]Melanocyte protein PMEL
D [auth B]Beta-2-microglobulin
C [auth A]MHC class I antigen, A-2 alpha chain-
B [auth E]T4H2 T cell receptor beta chain---
A [auth D]T4H2 T cell receptor alpha chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth C]IPR022409PKD/Chitinase domainDomain
E [auth C]IPR000601PKD domainDomain
E [auth C]IPR045219PKD- and KLD-Associated TransmembraneFamily
E [auth C]IPR035986PKD domain superfamilyHomologous Superfamily
E [auth C]IPR013783Immunoglobulin-like foldHomologous Superfamily
E [auth C]IPR046846PKAT, KLD domainDomain
E [auth C]IPR059017PMEL/NMB, N-terminal domainDomain
D [auth B]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D [auth B]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
D [auth B]IPR013783Immunoglobulin-like foldHomologous Superfamily
D [auth B]IPR007110Immunoglobulin-like domainDomain
D [auth B]IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
D [auth B]IPR003597Immunoglobulin C1-setDomain
D [auth B]IPR015707Beta-2-MicroglobulinFamily
C [auth A]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth A]IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
C [auth A]IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
C [auth A]IPR003597Immunoglobulin C1-setDomain
C [auth A]IPR010579MHC class I, alpha chain, C-terminalDomain
C [auth A]IPR013783Immunoglobulin-like foldHomologous Superfamily
C [auth A]IPR011161MHC class I-like antigen recognition-likeDomain
C [auth A]IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
C [auth A]IPR007110Immunoglobulin-like domainDomain
C [auth A]IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
C [auth A]IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
E [auth C]Pharos:  P40967
D [auth B]Pharos:  P61769