6VKJ

Crystal structure of the G domain of human guanylate-binding protein 2 (hGBP2) in complex with GDP

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6vkja2	All alpha proteins	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6vkja1	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	G proteins	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF02263,PF02841	e6vkjA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF02263,PF02841	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02263	Guanylate-binding protein, N-terminal domain (GBP)	Guanylate-binding protein, N-terminal domain	Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.	Domain
A	PF02841	Guanylate-binding protein, C-terminal domain (GBP_C)	Guanylate-binding protein, C-terminal domain	Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Guanylate-binding protein 2	molecular function inhibitor activity molecular function regulator activity enzyme regulator activity peptidase regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding molecular function inhibitor activity molecular function regulator activity enzyme regulator activity peptidase regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding identical protein binding protein binding protein homodimerization activity protein dimerization activity pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus positive regulation of biological process response to biotic stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus positive regulation of biological process response to biotic stimulus positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of immune response regulation of response to stress response to stress innate immune response regulation of immune system process response to external biotic stimulus positive regulation of immune system process regulation of biological process positive regulation of innate immune response defense response immune response response to other organism regulation of innate immune response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus immune system process defense response to other organism positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response cellular response to stimulus response to organic substance response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid cellular process cellular response to organic substance response to molecule of bacterial origin defense response to bacterium response to cytokine cellular response to tumor necrosis factor cellular response to cytokine stimulus response to tumor necrosis factor defense response to protozoan response to protozoan response to type II interferon cellular response to type II interferon cytolysis in another organism disruption of cell in another organism disruption of anatomical structure in another organism cytolysis killing of cells of another organism cell killing positive regulation of programmed cell death regulation of cellular process pyroptosis regulation of programmed cell death cell death positive regulation of pyroptosis programmed cell death positive regulation of cellular process defense response to virus response to virus cellular response to interleukin-1 response to interleukin-1 positive regulation of cell communication positive regulation of signal transduction pattern recognition receptor signaling pathway regulation of signal transduction cell communication cellular component biogenesis immune response-activating signaling pathway cellular component assembly inflammasome-mediated signaling pathway signal transduction innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of pattern recognition receptor signaling pathway inflammatory response cytoplasmic pattern recognition receptor signaling pathway regulation of cellular component organization positive regulation of cellular component organization intracellular receptor signaling pathway signaling AIM2 inflammasome complex assembly regulation of cytoplasmic pattern recognition receptor signaling pathway cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly immune response-regulating signaling pathway protein-containing complex assembly cellular component organization or biogenesis regulation of signaling positive regulation of AIM2 inflammasome complex assembly protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis regulation of AIM2 inflammasome complex assembly regulation of cell communication positive regulation of signaling protein localization localization cellular localization protein localization to organelle cellular macromolecule localization macromolecule localization protein localization to nucleus defense response to Gram-positive bacterium	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membrane intracellular vesicle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle vesicle organelle membrane Golgi apparatus endomembrane system Golgi membrane bounding membrane of organelle perinuclear region of cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036543	Guanylate-binding protein, C-terminal domain superfamily	Homologous Superfamily
A	IPR015894	Guanylate-binding protein, N-terminal	Domain
A	IPR003191	Guanylate-binding protein/Atlastin, C-terminal	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR030386	GB1/RHD3-type guanine nucleotide-binding (G) domain	Domain
A	IPR037684	Guanylate-binding protein, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P32456	Liver Cirrhosis, Experimental malignant colon neoplasm malignant pancreatic neoplasm ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adenoma pilocytic astrocytoma B-cell chronic lymphocytic leukemia Sjogren syndrome coronary artery disease dermatomyositis endometriosis juvenile dermatomyositis lung cancer malignant ependymoma Liver Cirrhosis, Experimental malignant colon neoplasm malignant pancreatic neoplasm ovarian cancer pancreatic intraductal papillary-mucinous neoplasm adenoma pilocytic astrocytoma B-cell chronic lymphocytic leukemia Sjogren syndrome coronary artery disease dermatomyositis endometriosis juvenile dermatomyositis lung cancer malignant ependymoma myocardial ischemia pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia adrenal cortex carcinoma pituitary cancer breast cancer subependymal giant cell astrocytoma Crohn disease diabetes mellitus gastric carcinoma limb-girdle muscular dystrophy lung carcinoma malignant glioma myopathy pancreatic intraductal papillary-mucinous carcinoma Pick disease astrocytic tumor sarcoidosis chronic kidney disease ulcerative colitis cystic fibrosis Emery-Dreifuss muscular dystrophy glioblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.