6VHH | pdb_00006vhh

Human Teneurin-2 and human Latrophilin-3 binary complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilySea urchin egg lectin (SUEL)-like 8052987 3002155 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BGal_Lectine6vhhB1 A: beta sandwichesX: jelly-rollH: Latrophilin 1 gal_lectin domain (From Topology)T: Latrophilin 1 gal_lectin domainF: Gal_LectinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.740 Mainly Beta Sandwich Jelly Rolls Rhamnose-binding lectin domain (RBL)CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02140D-galactoside/L-rhamnose binding SUEL lectin domain (SUEL_Lectin)D-galactoside/L-rhamnose binding SUEL lectin domainThe D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [1]. The sea urchin egg lectin (SUEL) forms ...The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [1]. The sea urchin egg lectin (SUEL) forms a new class of lectins that binds D-galactoside and L-rhamnose, with preference for L-rhamnose [1,2].
Domain
PF25023Teneurin YD-shell (TEN_YD-shell)Teneurin YD-shell- Repeat
PF25021Teneurin NHL domain (TEN_NHL)Teneurin NHL domain- Repeat
PF24329Teneurin 1-4, FN-plug domain (FN-plug_TEN1-4)Teneurin 1-4, FN-plug domainThis entry represents the FN-plug domain found near the central region of Teneurins 1 to 4, a group of proteins involved in development and function of the nervous system [1-3]. This domain forms numerous hydrogen-bonding and hydrophobic interactions ...This entry represents the FN-plug domain found near the central region of Teneurins 1 to 4, a group of proteins involved in development and function of the nervous system [1-3]. This domain forms numerous hydrogen-bonding and hydrophobic interactions with the YD-shell interior [3].
Domain
PF23538Teneurin antibiotic-binding-like domain (Teneurin_ABD)Teneurin antibiotic-binding-like domainThe Antibiotic-Binding-Like Domain (ABD) is a conserved structural motif identified in the teneurin family of proteins, characterized by its resemblance to bacterial proteins known to bind small-molecule antibiotics such as bleomycin and zorbamycin. ...The Antibiotic-Binding-Like Domain (ABD) is a conserved structural motif identified in the teneurin family of proteins, characterized by its resemblance to bacterial proteins known to bind small-molecule antibiotics such as bleomycin and zorbamycin. In the crystal structure of chicken Ten2, the ABD comprises approximately 120 residues and is positioned immediately downstream of the shell exit site. Structural homology analyses reveal similarities between the ABD of chicken Ten2 and antibiotic-binding proteins found in bacteria. These bacterial proteins confer resistance to antibiotics by sequestering them, thereby preventing their activation by oxygen. The ABD of teneurins wraps around a long helix that leads into the most C-terminal domain, known as the ToxGHH domain.
Domain
PF15636GHH signature containing HNH/Endo VII superfamily nuclease toxin (Tox-GHH)GHH signature containing HNH/Endo VII superfamily nuclease toxin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Adhesion G protein-coupled receptor L3
Teneurin-2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR017983GPCR, family 2, secretin-like, conserved siteConserved Site
IPR036445GPCR family 2, extracellular hormone receptor domain superfamilyHomologous Superfamily
IPR000832GPCR, family 2, secretin-likeFamily
IPR043159D-galactoside/L-rhamnose binding SUEL lectin domain superfamilyHomologous Superfamily
IPR000203GPS motifConserved Site
IPR003112Olfactomedin-like domainDomain
IPR017981GPCR, family 2-like, 7TMDomain
IPR003924GPCR, family 2, latrophilinFamily
IPR001879GPCR, family 2, extracellular hormone receptor domainDomain
IPR003334GPCR, family 2, latrophilin, C-terminalDomain
IPR032471AGRL2-4 , GAIN subdomain ADomain
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainDomain
IPR046338GAIN domain superfamilyHomologous Superfamily
IPR057244GAIN, subdomain BDomain
IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
IPR056822Teneurin, NHL domainDomain
IPR008969Carboxypeptidase-like, regulatory domain superfamilyHomologous Superfamily
IPR000742EGF-like domainDomain
IPR028916Tox-GHH domainDomain
IPR006530YD repeatRepeat
IPR022385Rhs repeat-associated coreDomain
IPR057629Teneurin-1-4-like, galactose-binding domain-likeDomain
IPR051216TeneurinFamily
IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
IPR056820Teneurin, TTR-like domainDomain
IPR001881EGF-like calcium-binding domainDomain
IPR056823Teneurin-like, YD-shellDomain
IPR009471Teneurin intracellular, N-terminalDomain
IPR057627Teneurin 1-4-like, FN-plug domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9HAR2
PharosQ9NT68