6VDK
CryoEM structure of HIV-1 conserved Intasome Core
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribonuclease H-like | 8044526 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | N-terminal Zn binding domain of HIV integrase-like | 8037847 | 3001203 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | N-terminal Zn binding domain of HIV integrase-like | 8037847 | 3001203 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8044526 | 3000143 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribonuclease H-like | 8044526 | 3000143 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | N-terminal Zn binding domain of HIV integrase-like | 8037847 | 3001203 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | N-terminal Zn binding domain of HIV integrase-like | 8037847 | 3001203 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribonuclease H-like | 8044526 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00552 | e6vdkA3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
A | PF02022 | e6vdkA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF02022 | ECOD (1.6) |
A | PF00665 | e6vdkA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
B | PF00552 | e6vdkB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
B | PF02022 | e6vdkB1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF02022 | ECOD (1.6) |
B | PF00665 | e6vdkB3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
C | PF00552 | e6vdkC3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
C | PF02022 | e6vdkC1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF02022 | ECOD (1.6) |
C | PF00665 | e6vdkC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
I | PF00552 | e6vdkI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
K [auth M] | PF00552 | e6vdkM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
D | PF00552 | e6vdkD3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
D | PF02022 | e6vdkD2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF02022 | ECOD (1.6) |
D | PF00665 | e6vdkD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00665 | ECOD (1.6) |
J | PF00552 | e6vdkJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
L [auth P] | PF00552 | e6vdkP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00552 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02022 | Integrase Zinc binding domain (Integrase_Zn) | Integrase Zinc binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ... | Domain | |
PF00552 | Integrase DNA binding domain (IN_DBD_C) | Integrase DNA binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This do ... | Domain | |
PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain | |