6VCD
Cryo-EM structure of IRP2-FBXL5-SKP1 complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d6vcdc2 | All alpha proteins | Skp1 dimerisation domain-like | Skp1 dimerisation domain-like | Skp1 dimerisation domain-like | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d6vcdc1 | Alpha and beta proteins (a+b) | POZ domain | POZ domain | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | LRR_8_4 | e6vcdB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_4 | ECOD (1.6) |
B | F-box-like | e6vcdB2 | A: alpha arrays | X: F-box domain (From Topology) | H: F-box domain (From Topology) | T: F-box domain | F: F-box-like | ECOD (1.6) |
C | Skp1_POZ | e6vcdC1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00330 | Aconitase family (aconitate hydratase) (Aconitase) | Aconitase family (aconitate hydratase) | - | Family | |
PF00694 | Aconitase C-terminal domain (Aconitase_C) | Aconitase C-terminal domain | Members of this family usually also match to Pfam:PF00330. This domain undergoes conformational change in the enzyme mechanism [1]. | Domain | |
PF13516 | Leucine Rich repeat (LRR_6) | Leucine Rich repeat | - | Repeat | |
PF12937 | F-box-like (F-box-like) | F-box-like | This is an F-box-like family. | Domain | |
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |
PF01466 | Skp1 family, dimerisation domain (Skp1) | Skp1 family, dimerisation domain | - | Domain |