6VBV | pdb_00006vbv

Structure of the bovine BBSome:ARL6:GTP complex

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth 3]Rase6vbv31 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
D [auth 4]TPR_15e6vbv41 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I [auth 3]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth 9]PF14728PTHB1 GAE domain (PTHB1_GAE)PTHB1 GAE domainThis entry represents the gamma-adaptin ear (GAE) domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1,2]. PTHB1 is the major binding sub ...This entry represents the gamma-adaptin ear (GAE) domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1,2]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [2].
Domain
G [auth 8]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
G [auth 8]PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
E [auth 5]PF07289Bardet-Biedl syndrome 5 protein (BBL5)Bardet-Biedl syndrome 5 protein- Family
D [auth 4]PF14559Tetratricopeptide repeat (TPR_19)Tetratricopeptide repeat- Repeat
D [auth 4]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
D [auth 4]PF13414TPR repeat (TPR_11)TPR repeat- Repeat
C [auth 2]PF14781Ciliary BBSome complex subunit 2, N-terminal (BBS2_N)Ciliary BBSome complex subunit 2, N-terminal- Repeat
C [auth 2]PF14782BBS2 GAE domain (BBS2_GAE)BBS2 GAE domainThis entry represents the gamma-adaptin ear (GAE) domain of BBS2. BBS2 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ...This entry represents the gamma-adaptin ear (GAE) domain of BBS2. BBS2 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ciliogenesis, as well as the assembly and movement of intraflagellar transport proteins along the ciliary membrane [1-3].
Domain
C [auth 2]PF14783Ciliary BBSome complex subunit 2, middle region (BBS2_Mid)Ciliary BBSome complex subunit 2, middle region- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth 3]ADP-ribosylation factor-like protein 6
H [auth 9]Bardet-Biedl syndrome 9-
G [auth 8]Tetratricopeptide repeat domain 8
F [auth 7]Bardet-Biedl syndrome 7 protein homolog-
E [auth 5]Bardet-Biedl syndrome 5 protein homolog
D [auth 4]Bardet-Biedl syndrome 4 protein homolog
C [auth 2]Bardet-Biedl syndrome 2 protein homolog-
B [auth 1]BBS1 domain-containing protein---
A [auth 0]Bardet-Biedl syndrome 18 protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth 3]IPR041839ADP-ribosylation factor-like protein 6Family
I [auth 3]IPR005225Small GTP-binding domainDomain
I [auth 3]IPR024156Small GTPase superfamily, ARF typeFamily
I [auth 3]IPR006689Small GTPase superfamily, ARF/SAR typeFamily
H [auth 9]IPR026511Parathyroid hormone-responsive B1Family
H [auth 9]IPR055364PTHB1, C-terminal helix bundle domainDomain
H [auth 9]IPR055362PTHB1, platform domainDomain
H [auth 9]IPR028074PTHB1, GAE domainDomain
H [auth 9]IPR028073PTHB1, N-terminal domainDomain
H [auth 9]IPR055363PTHB1, hairpin domainDomain
G [auth 8]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G [auth 8]IPR019734Tetratricopeptide repeatRepeat
G [auth 8]IPR028796Tetratricopeptide repeat protein 8Family
F [auth 7]IPR056332BBS7, beta-propellerDomain
F [auth 7]IPR056334BBS7, GAE domainDomain
F [auth 7]IPR056333BBS7, platform domainDomain
F [auth 7]IPR016575Bardet-Biedl syndrome 7 proteinFamily
F [auth 7]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F [auth 7]IPR056335BBS7, helical hairpinDomain
F [auth 7]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth 5]IPR030804BBSome complex member BBS5/sex-determination protein fem-3Family
E [auth 5]IPR011993PH-like domain superfamilyHomologous Superfamily
E [auth 5]IPR014003BBSome complex member BBS5, PH domainDomain
E [auth 5]IPR006606BBSome complex member BBS5Family
D [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
D [auth 4]IPR019734Tetratricopeptide repeatRepeat
C [auth 2]IPR055381BBS2, C-terminal helix bundle domainDomain
C [auth 2]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth 2]IPR029429Ciliary BBSome complex subunit 2, middle regionDomain
C [auth 2]IPR055380BBS2, hairpin domainDomain
C [auth 2]IPR016616Bardet-Biedl syndrome 2 proteinFamily
C [auth 2]IPR029430Ciliary BBSome complex subunit 2, N-terminalDomain
C [auth 2]IPR029333BBS2, GAE domainDomain
C [auth 2]IPR055379BBS2, platform domainDomain
A [auth 0]IPR028233Cilia BBSome complex subunit 10Family