6V5C | pdb_00006v5c

Human Drosha and DGCR8 in complex with Primary MicroRNA (MP/RNA complex) - partially docked state

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth C]	SCOP2B Superfamily	dsRNA-binding domain-like	8033593	3000985	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	dsRNA-binding domain-like	8033593	3000985	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e6v5cA01	A: Rossmann-like	X: Rossmann-related	H: FAD/NAD(P)-binding domain	T: FUT8_N_cat	F:	ECOD (20:10:01)
B [auth C]		e6v5cC1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Class I glutamine amidotransferase-like	T: OTCace_N	F:	ECOD (20:10:01)
C [auth B]		e6v5cB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Class I glutamine amidotransferase-like	T: Cation_ATPase_C,Cation_ATPase_N	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00636	Ribonuclease III domain (Ribonuclease_3)	Ribonuclease III domain	-	Family
A	PF00035	Double-stranded RNA binding motif (dsrm)	Double-stranded RNA binding motif	Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five d ...	Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.	Domain
A	PF14622	Ribonuclease-III-like (Ribonucleas_3_3)	Ribonuclease-III-like	-	Family
A	PF26050	Ribonuclease 3, central domain, two antiparallel helical region (Helical_CED_Drosha)	Ribonuclease 3, central domain, two antiparallel helical region	This entry represents a region of the central domain (CED) of human Ribonuclease 3 (Drosha) and similar animal sequences. Drosha is a double-stranded RNA-specific endoribonuclease that is involved in the initial step of microRNA (miRNA) biogenesis. I ...	This entry represents a region of the central domain (CED) of human Ribonuclease 3 (Drosha) and similar animal sequences. Drosha is a double-stranded RNA-specific endoribonuclease that is involved in the initial step of microRNA (miRNA) biogenesis. It is a component of the microprocessor complex required to process primary miRNA transcripts to release precursor miRNA in the nucleus. This region shows two antiparallel helices [4-7].	Domain
B [auth C], C [auth B]	PF00035	Double-stranded RNA binding motif (dsrm)	Double-stranded RNA binding motif	Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five d ...	Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Ribonuclease 3	SMAD binding protein binding binding R-SMAD binding lipid binding lipopolysaccharide binding carbohydrate derivative binding RNA binding primary miRNA binding nucleic acid binding identical protein binding protein homodimerization activity protein dimerization activity enzyme binding SMAD binding protein binding binding R-SMAD binding lipid binding lipopolysaccharide binding carbohydrate derivative binding RNA binding primary miRNA binding nucleic acid binding identical protein binding protein homodimerization activity protein dimerization activity enzyme binding DEAD/H-box RNA helicase binding ribonuclease III activity double-stranded RNA-specific ribonuclease activity endonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity RNA endonuclease activity catalytic activity cation binding ion binding metal ion binding small molecule binding	regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process pre-miRNA processing negative regulation of biological process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process negative regulation of cellular process RNA processing negative regulation of macromolecule metabolic process negative regulation of metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulatory ncRNA processing regulatory ncRNA-mediated gene silencing negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process miRNA processing miRNA metabolic process ribonucleoprotein complex biogenesis rRNA processing cellular component biogenesis ribosome biogenesis cellular component organization or biogenesis rRNA metabolic process regulation of defense response response to stimulus regulation of response to external stimulus defense response regulation of inflammatory response response to external stimulus regulation of response to stimulus response to stress regulation of response to stress inflammatory response multicellular organismal process regulation of leukocyte differentiation cellular developmental process regulation of developmental process regulation of leukocyte activation cell development regulation of cell activation mononuclear cell differentiation regulation of cell differentiation lymphocyte activation lymphocyte differentiation regulation of cell development leukocyte activation regulation of T cell differentiation multicellular organism development T cell activation cell differentiation anatomical structure development T cell differentiation regulation of immune system process regulation of multicellular organismal process developmental process regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis regulation of regulatory T cell differentiation cell activation regulation of T cell activation immune system process regulatory T cell differentiation regulation of hemopoiesis leukocyte differentiation regulation of lymphocyte activation primary miRNA processing biological process involved in interspecies interaction between organisms response to other organism defense response to Gram-negative bacterium response to biotic stimulus defense response to bacterium response to bacterium response to external biotic stimulus regulation of primary metabolic process regulation of RNA metabolic process regulation of miRNA metabolic process regulation of nucleobase-containing compound metabolic process defense response to Gram-positive bacterium	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol nucleoplasm synapse cell junction glutamatergic synapse postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse microprocessor complex protein-containing complex catalytic complex nuclear protein-containing complex endonuclease complex endoribonuclease complex ribonuclease III complex intracellular protein-containing complex
B [auth C], C [auth B]	Microprocessor complex subunit DGCR8	RNA binding double-stranded RNA binding binding nucleic acid binding primary miRNA binding protein-macromolecule adaptor activity molecular adaptor activity protein-RNA adaptor activity identical protein binding protein binding protein homodimerization activity protein dimerization activity tetrapyrrole binding heme binding RNA binding double-stranded RNA binding binding nucleic acid binding primary miRNA binding protein-macromolecule adaptor activity molecular adaptor activity protein-RNA adaptor activity identical protein binding protein binding protein homodimerization activity protein dimerization activity tetrapyrrole binding heme binding cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of stem cell proliferation regulation of biological process stem cell proliferation cell population proliferation regulation of cellular process regulation of cell population proliferation biological regulation pre-miRNA processing cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of stem cell proliferation regulation of biological process stem cell proliferation cell population proliferation regulation of cellular process regulation of cell population proliferation biological regulation pre-miRNA processing negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of post-transcriptional gene silencing nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression positive regulation of post-transcriptional gene silencing by RNA positive regulation of macromolecule metabolic process RNA processing negative regulation of metabolic process primary metabolic process regulation of miRNA processing regulation of gene expression miRNA-mediated post-transcriptional gene silencing negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process post-transcriptional gene silencing miRNA processing regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of pre-miRNA processing positive regulation of biological process RNA metabolic process regulation of miRNA-mediated gene silencing RNA biosynthetic process nucleic acid biosynthetic process regulation of regulatory ncRNA processing positive regulation of miRNA-mediated gene silencing regulation of gene silencing by regulatory ncRNA positive regulation of biosynthetic process negative regulation of cellular process regulation of post-transcriptional gene silencing by regulatory ncRNA positive regulation of miRNA processing positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process regulatory ncRNA-mediated post-transcriptional gene silencing regulatory ncRNA processing regulatory ncRNA-mediated gene silencing regulation of post-transcriptional gene silencing negative regulation of biosynthetic process positive regulation of gene expression positive regulation of pre-miRNA processing primary miRNA processing	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoplasm cytosol nucleoplasm synapse cell junction glutamatergic synapse postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse microprocessor complex protein-containing complex catalytic complex nuclear protein-containing complex endonuclease complex endoribonuclease complex ribonuclease III complex intracellular protein-containing complex site of double-strand break site of DNA damage chromosome nuclear body
D	Pri-miR-16-2 (66-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR044442	RNase III, double-stranded RNA binding domain, animal	Domain
A	IPR011907	Ribonuclease III	Family
A	IPR000999	Ribonuclease III domain	Domain
A	IPR058938	Ribonuclease 3, central domain, two antiparallel helical region	Domain
A	IPR036389	Ribonuclease III, endonuclease domain superfamily	Homologous Superfamily
A	IPR014720	Double-stranded RNA-binding domain	Domain
B [auth C], C [auth B]	IPR036020	WW domain superfamily	Homologous Superfamily
B [auth C], C [auth B]	IPR040375	Microprocessor complex subunit DGCR8	Family
B [auth C], C [auth B]	IPR001202	WW domain	Domain
B [auth C], C [auth B]	IPR014720	Double-stranded RNA-binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9NRR4	kidney Wilms tumor male infertility Bilateral Wilms Tumor pancreatic intraductal papillary-mucinous neoplasm cancer lymphoplasmacytic lymphoma medulloblastoma schizophrenia dermatomyositis ovarian cancer
B [auth C], C [auth B]	Pharos: Q8WYQ5	DiGeorge syndrome kidney Wilms tumor schizophrenia Behavior Disorders cystic fibrosis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm psychiatric disorder depressive disorder ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia velocardiofacial syndrome pancreatic intraductal papillary-mucinous carcinoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.