6V1Z | pdb_00006v1z

genome-containing AAVrh.39 particles


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth z]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
XA [auth x]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
WA [auth w]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
FB [auth 6]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
EB [auth 5]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
DB [auth 4]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
CB [auth 3]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
BB [auth 2]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
AB [auth 1]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth z]Parvo_coate6v1zz1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
ZParvo_coate6v1zZ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
YA [auth y]Parvo_coate6v1zy1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
YParvo_coate6v1zY1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
XA [auth x]Parvo_coate6v1zx1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
XParvo_coate6v1zX1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
WA [auth w]Parvo_coate6v1zw1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
WParvo_coate6v1zW1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
VA [auth v]Parvo_coate6v1zv1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
VParvo_coate6v1zV1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
UA [auth u]Parvo_coate6v1zu1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
UParvo_coate6v1zU1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
TA [auth t]Parvo_coate6v1zt1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
TParvo_coate6v1zT1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
SA [auth s]Parvo_coate6v1zs1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
SParvo_coate6v1zS1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
RA [auth r]Parvo_coate6v1zr1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
RParvo_coate6v1zR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
QA [auth q]Parvo_coate6v1zq1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
QParvo_coate6v1zQ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
PA [auth p]Parvo_coate6v1zp1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
PParvo_coate6v1zP1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
OA [auth o]Parvo_coate6v1zo1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
OParvo_coate6v1zO1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
NA [auth n]Parvo_coate6v1zn1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
NParvo_coate6v1zN1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
MA [auth m]Parvo_coate6v1zm1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
MParvo_coate6v1zM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
LA [auth l]Parvo_coate6v1zl1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
LParvo_coate6v1zL1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
KA [auth k]Parvo_coate6v1zk1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
KParvo_coate6v1zK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
JA [auth j]Parvo_coate6v1zj1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
JParvo_coate6v1zJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
IA [auth i]Parvo_coate6v1zi1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
IParvo_coate6v1zI1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
HB [auth 8]Parvo_coate6v1z81 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
HA [auth h]Parvo_coate6v1zh1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
HParvo_coate6v1zH1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
GB [auth 7]Parvo_coate6v1z71 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
GA [auth g]Parvo_coate6v1zg1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
GParvo_coate6v1zG1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
FB [auth 6]Parvo_coate6v1z61 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
FA [auth f]Parvo_coate6v1zf1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
FParvo_coate6v1zF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
EB [auth 5]Parvo_coate6v1z51 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
EA [auth e]Parvo_coate6v1ze1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
EParvo_coate6v1zE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
DB [auth 4]Parvo_coate6v1z41 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
DA [auth d]Parvo_coate6v1zd1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
DParvo_coate6v1zD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
CB [auth 3]Parvo_coate6v1z31 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
CA [auth c]Parvo_coate6v1zc1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
CParvo_coate6v1zC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
BB [auth 2]Parvo_coate6v1z21 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
BA [auth b]Parvo_coate6v1zb1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
BParvo_coate6v1zB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
AB [auth 1]Parvo_coate6v1z11 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
AA [auth a]Parvo_coate6v1za1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
AParvo_coate6v1zA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA (5'-D(*CP*A)-3')---
Capsid protein VP1 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily