6V1T | pdb_00006v1t

Empty AAVrh.39 particle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
AB [auth 1]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
BB [auth 2]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
CB [auth 3]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
DB [auth 4]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
EB [auth 5]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
FB [auth 6]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
WA [auth w]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
XSCOP2 FamilyParvovirinae-like VP 8093897 4003479 SCOP2 (2022-06-29)
XSCOP2 SuperfamilyssDNA viruses 8093898 3000931 SCOP2 (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
ZA [auth z]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
XA [auth x]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyssDNA viruses 8093898 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AParvo_coate6v1tA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
AA [auth a]Parvo_coate6v1ta1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
AB [auth 1]Parvo_coate6v1t11 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
BParvo_coate6v1tB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
BA [auth b]Parvo_coate6v1tb1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
BB [auth 2]Parvo_coate6v1t21 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
CParvo_coate6v1tC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
CA [auth c]Parvo_coate6v1tc1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
CB [auth 3]Parvo_coate6v1t31 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
DParvo_coate6v1tD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
DA [auth d]Parvo_coate6v1td1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
DB [auth 4]Parvo_coate6v1t41 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
EParvo_coate6v1tE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
EA [auth e]Parvo_coate6v1te1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
EB [auth 5]Parvo_coate6v1t51 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
FParvo_coate6v1tF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
FA [auth f]Parvo_coate6v1tf1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
FB [auth 6]Parvo_coate6v1t61 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
GParvo_coate6v1tG1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
GA [auth g]Parvo_coate6v1tg1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
GB [auth 7]Parvo_coate6v1t71 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
HParvo_coate6v1tH1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
HA [auth h]Parvo_coate6v1th1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
HB [auth 8]Parvo_coate6v1t81 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
IParvo_coate6v1tI1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
IA [auth i]Parvo_coate6v1ti1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
JParvo_coate6v1tJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
JA [auth j]Parvo_coate6v1tj1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
KParvo_coate6v1tK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
KA [auth k]Parvo_coate6v1tk1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
LParvo_coate6v1tL1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
LA [auth l]Parvo_coate6v1tl1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
MParvo_coate6v1tM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
NParvo_coate6v1tN1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
NA [auth n]Parvo_coate6v1tn1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
OParvo_coate6v1tO1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
OA [auth o]Parvo_coate6v1to1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
PParvo_coate6v1tP1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
PA [auth p]Parvo_coate6v1tp1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
QParvo_coate6v1tQ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
QA [auth q]Parvo_coate6v1tq1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
RParvo_coate6v1tR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
RA [auth r]Parvo_coate6v1tr1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
SParvo_coate6v1tS1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
SA [auth s]Parvo_coate6v1ts1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
TParvo_coate6v1tT1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
TA [auth t]Parvo_coate6v1tt1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
UParvo_coate6v1tU1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
UA [auth u]Parvo_coate6v1tu1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
VParvo_coate6v1tV1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
VA [auth v]Parvo_coate6v1tv1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
WParvo_coate6v1tW1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
WA [auth w]Parvo_coate6v1tw1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
XParvo_coate6v1tX1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
YParvo_coate6v1tY1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
YA [auth y]Parvo_coate6v1ty1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
ZParvo_coate6v1tZ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
ZA [auth z]Parvo_coate6v1tz1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
XA [auth x]Parvo_coate6v1tx1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)
MA [auth m]Parvo_coate6v1tm1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: Parvo_coatECOD (v294.1)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily