6V0K | pdb_00006v0k

Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6v0ka_	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Talaromyces verruculosus ) [TaxId: 198730 ],	SCOPe (2.08)
B	d6v0kb_	All alpha proteins	Terpenoid synthases	Terpenoid synthases	automated matches	automated matches	(Talaromyces verruculosus ) [TaxId: 198730 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Isoprenyl diphosphate synthases	8095322	4001453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Terpenoid synthases	8095323	3001615	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Terpenoid synthases	8095323	3001615	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	polyprenyl_synt	e6v0kA1	A: alpha bundles	X: Terpenoid synthases (From Topology)	H: Terpenoid synthases (From Topology)	T: Terpenoid synthases	F: polyprenyl_synt	ECOD (1.6)
B	polyprenyl_synt	e6v0kB1	A: alpha bundles	X: Terpenoid synthases (From Topology)	H: Terpenoid synthases (From Topology)	T: Terpenoid synthases	F: polyprenyl_synt	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)
B	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Terpene synthase	geranylgeranyl diphosphate synthase activity prenyl diphosphate synthase activity prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity intramolecular lyase activity isomerase activity copalyl diphosphate synthase activity cation binding ion binding binding metal ion binding small molecule binding	mycotoxin metabolic process secondary metabolite biosynthetic process biosynthetic process mycotoxin biosynthetic process metabolic process cellular process toxin biosynthetic process toxin metabolic process secondary metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process lipid metabolic process isoprenoid metabolic process mycotoxin metabolic process secondary metabolite biosynthetic process biosynthetic process mycotoxin biosynthetic process metabolic process cellular process toxin biosynthetic process toxin metabolic process secondary metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process lipid metabolic process isoprenoid metabolic process small molecule biosynthetic process alcohol biosynthetic process small molecule metabolic process alcohol metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A, B	IPR033749	Polyprenyl synthetase, conserved site	Conserved Site
A, B	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A, B	IPR000092	Polyprenyl synthetase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.