The structure of a red shifted photosystem I complex
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth L] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
| EA [auth 0] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
| DA [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
| Z [auth j] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
| H [auth J] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
| AA [auth 7] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
| Y [auth h] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
| X [auth i] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
| G [auth I] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
| W [auth 6] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
| V [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
| U [auth 5] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
| T [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
| S [auth 4] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
| R [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
| Q [auth 2] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
| P [auth b] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
| J [auth M] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
| GA [auth 9] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
| FA [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
| M [auth 1] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
| L [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth L] | ACR_tran | e6uzvL1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| EA [auth 0] | ACR_tran | e6uzv01 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| DA [auth l] | ACR_tran | e6uzvl1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| Z [auth j] | ACR_tran | e6uzvj1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| H [auth J] | ACR_tran | e6uzvJ1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| AA [auth 7] | ACR_tran | e6uzv71 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| Y [auth h] | ACR_tran | e6uzvh1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| X [auth i] | ACR_tran | e6uzvi1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| G [auth I] | ACR_tran | e6uzvI1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| W [auth 6] | ACR_tran | e6uzv61 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| V [auth f] | ACR_tran | e6uzvf1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| F | ACR_tran | e6uzvF1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| U [auth 5] | ACR_tran | e6uzv51 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| T [auth e] | ACR_tran | e6uzve1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| E | ACR_tran | e6uzvE1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| S [auth 4] | ACR_tran | e6uzv41 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| R [auth d] | ACR_tran | e6uzvd1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| D | ACR_tran | e6uzvD1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| O [auth 3] | ACR_tran | e6uzv31 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| N [auth c] | ACR_tran | e6uzvc1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| C | ACR_tran | e6uzvC1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| Q [auth 2] | ACR_tran | e6uzv21 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| P [auth b] | ACR_tran | e6uzvb1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| B | ACR_tran | e6uzvB1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| K | ACR_tran | e6uzvK1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| CA [auth 8] | ACR_tran | e6uzv81 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| BA [auth k] | ACR_tran | e6uzvk1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| J [auth M] | ACR_tran | e6uzvM1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| GA [auth 9] | ACR_tran | e6uzv91 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| FA [auth m] | ACR_tran | e6uzvm1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| M [auth 1] | ACR_tran | e6uzv11 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| L [auth a] | ACR_tran | e6uzva1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
| A | ACR_tran | e6uzvA1 | A: a/b three-layered sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: ACR_tran | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| I [auth L] | 1.20.1240.10 | Mainly Alpha | Up-down Bundle | Photosystem 1 Reaction Centre Subunit Xi | Chain: L | CATH (utative) |
| EA [auth 0] | 1.20.1240.10 | Mainly Alpha | Up-down Bundle | Photosystem 1 Reaction Centre Subunit Xi | Chain: L | CATH (utative) |
| DA [auth l] | 1.20.1240.10 | Mainly Alpha | Up-down Bundle | Photosystem 1 Reaction Centre Subunit Xi | Chain: L | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| DA [auth l], EA [auth 0], I [auth L] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
| AA [auth 7], H [auth J], Z [auth j] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
| G [auth I], X [auth i], Y [auth h] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
| F, V [auth f], W [auth 6] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
| E, T [auth e], U [auth 5] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
| D, R [auth d], S [auth 4] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
| C, N [auth c], O [auth 3] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| B, P [auth b], Q [auth 2] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
| BA [auth k], CA [auth 8], K | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
| FA [auth m], GA [auth 9], J [auth M] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
| A, L [auth a], M [auth 1] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem I chimera |














