Annotations: 6UPV

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Actin-like ATPases	8043436	3000092	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Actin-like ATPases	8043438	3000092	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth M]	Vinculin_2nd	e6upvM1	A: alpha bundles	X: Four-helical up-and-down bundle	H: alpha-catenin-related	T: alpha-catenin/vinculin	F: Vinculin_2nd	ECOD (1.6)
C [auth L]	Vinculin_2nd	e6upvL1	A: alpha bundles	X: Four-helical up-and-down bundle	H: alpha-catenin-related	T: alpha-catenin/vinculin	F: Vinculin_2nd	ECOD (1.6)
B [auth A]	Actin_1st	e6upvA2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
B [auth A]	Actin_2nd	e6upvA1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)
D [auth B]	Actin_1st	e6upvB1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
D [auth B]	Actin_2nd	e6upvB2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)
E [auth C]	Actin_1st	e6upvC2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
E [auth C]	Actin_2nd	e6upvC1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)
F [auth D]	Actin_1st	e6upvD1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
F [auth D]	Actin_2nd	e6upvD2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)
G [auth E]	Actin_1st	e6upvE1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_1st	ECOD (1.6)
G [auth E]	Actin_2nd	e6upvE2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Actin_2nd	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth M], C [auth L]	PF01044	Vinculin family (Vinculin)	Vinculin family	-	Family
B [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	PF00022	Actin (Actin)	Actin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth M], C [auth L]	Catenin alpha-1	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cell adhesion molecule binding cadherin binding identical protein binding gamma-catenin binding vinculin binding RNA binding organic cyclic compound binding nucleic acid binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cell adhesion molecule binding cadherin binding identical protein binding gamma-catenin binding vinculin binding RNA binding organic cyclic compound binding nucleic acid binding structural molecule activity beta-catenin binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development system development neuroblast proliferation cell population proliferation cellular developmental process nervous system development generation of neurons neurogenesis cell differentiation cellular process neural precursor cell proliferation protein localization localization cellular localization cellular macromolecule localization macromolecule localization cell adhesion cell-cell adhesion epithelial cell-cell adhesion cellular response to stimulus regulation of integrin-mediated signaling pathway regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of integrin-mediated signaling pathway negative regulation of cellular process signal transduction regulation of biological process regulation of signaling integrin-mediated signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction regulation of response to stimulus regulation of cell communication positive regulation of cell communication positive regulation of signal transduction signal transduction in absence of ligand positive regulation of biological process regulation of programmed cell death positive regulation of extrinsic apoptotic signaling pathway in absence of ligand extrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of response to stimulus extrinsic apoptotic signaling pathway in absence of ligand positive regulation of cellular process positive regulation of programmed cell death regulation of apoptotic process positive regulation of extrinsic apoptotic signaling pathway cell death positive regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway in absence of ligand apoptotic process programmed cell death regulation of apoptotic signaling pathway positive regulation of signaling negative regulation of neural precursor cell proliferation regulation of developmental process regulation of neuroblast proliferation cell development regulation of cell differentiation regulation of neurogenesis regulation of cell development negative regulation of neuroblast proliferation regulation of nervous system development negative regulation of neurogenesis negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation regulation of neural precursor cell proliferation negative regulation of cell population proliferation regulation of multicellular organismal development negative regulation of developmental process negative regulation of cell development regulation of cell population proliferation negative regulation of multicellular organismal process cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cellular component organization or biogenesis apical junction assembly cell-cell junction assembly cell-cell junction organization cell migration cell motility female gonad development female sex differentiation development of primary female sexual characteristics ovarian follicle development gap junction assembly establishment or maintenance of cell polarity smoothened signaling pathway negative regulation of extrinsic apoptotic signaling pathway in absence of ligand negative regulation of signal transduction in absence of ligand negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of programmed cell death negative regulation of apoptotic process response to organic substance response to hormone response to chemical response to endogenous stimulus response to estrogen anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis animal organ morphogenesis positive regulation of smoothened signaling pathway regulation of smoothened signaling pathway negative regulation of locomotion regulation of cell motility regulation of locomotion negative regulation of cell motility locomotion cell projection organization neuron projection development regeneration response to axon injury neuron projection regeneration axon regeneration neuron differentiation cellular response to stress response to stress response to wounding plasma membrane bounded cell projection organization axon development neuron development cellular response to nitrogen compound response to alcohol response to organonitrogen compound cellular response to organic cyclic compound response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus cellular response to alcohol cellular response to organonitrogen compound response to indole-3-methanol cellular response to indole-3-methanol cellular response to organic substance response to organic cyclic compound regulation of localization regulation of protein localization regulation of protein localization to nucleus protein localization to nucleus negative regulation of protein localization to nucleus regulation of cellular localization protein localization to organelle negative regulation of protein localization	cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium cell-cell junction anchoring junction cell junction intracellular organelle intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle actin cytoskeleton cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium cell-cell junction anchoring junction cell junction intracellular organelle intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle actin cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane plasma membrane membrane protein complex extrinsic component of membrane membrane raft plasma membrane raft caveola membrane microdomain flotillin complex plasma membrane region adherens junction intercalated disc cell-cell contact zone acrosomal vesicle membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle focal adhesion cell-substrate junction apical junction complex zonula adherens
B [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	Actin, alpha skeletal muscle	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity	cellular developmental process cellular component assembly involved in morphogenesis non-membrane-bounded organelle assembly skeletal myofibril assembly cell development muscle cell differentiation cellular component organization cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation actin filament-based process cellular developmental process cellular component assembly involved in morphogenesis non-membrane-bounded organelle assembly skeletal myofibril assembly cell development muscle cell differentiation cellular component organization cellular component biogenesis muscle structure development striated muscle cell development cellular anatomical entity morphogenesis cellular component assembly muscle cell development cell differentiation actin filament-based process anatomical structure development cellular component organization or biogenesis developmental process skeletal muscle thin filament assembly actin cytoskeleton organization actomyosin structure organization organelle assembly actin filament organization anatomical structure morphogenesis organelle organization myofibril assembly anatomical structure formation involved in morphogenesis cellular process striated muscle cell differentiation supramolecular fiber organization cytoskeleton organization myotube cell development skeletal muscle fiber development skeletal muscle tissue development animal organ development tissue development myotube differentiation skeletal muscle organ development muscle tissue development muscle organ development	polymeric cytoskeletal fiber intracellular anatomical structure actin filament cellular anatomical entity actin cytoskeleton intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle supramolecular fiber supramolecular polymer supramolecular complex non-membrane-bounded organelle striated muscle thin filament polymeric cytoskeletal fiber intracellular anatomical structure actin filament cellular anatomical entity actin cytoskeleton intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle supramolecular fiber supramolecular polymer supramolecular complex non-membrane-bounded organelle striated muscle thin filament myofilament sarcomere contractile muscle fiber cytoplasm myofibril actin filament bundle actomyosin stress fiber contractile actin filament bundle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth M], C [auth L]	IPR001033	Alpha-catenin	Family
A [auth M], C [auth L]	IPR036723	Alpha-catenin/vinculin-like superfamily	Homologous Superfamily
A [auth M], C [auth L]	IPR006077	Vinculin/alpha-catenin	Family
A [auth M], C [auth L]	IPR000633	Vinculin, conserved site	Conserved Site
B [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	IPR020902	Actin/actin-like conserved site	Conserved Site
B [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	IPR004001	Actin, conserved site	Conserved Site
B [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
B [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	IPR004000	Actin family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth M], C [auth L]	Pharos: P35221	acute myeloid leukemia myelodysplastic syndrome patterned macular dystrophy 2 patterned dystrophy of the retinal pigment epithelium gastrointestinal stromal tumor lymphoplasmacytic lymphoma malignant pancreatic neoplasm myopathy ovarian cancer pancreatic intraductal papillary-mucinous neoplasm astrocytic tumor dermatomyositis primitive neuroectodermal tumor gastric carcinoma Hematopoetic Myelodysplasia acute myeloid leukemia myelodysplastic syndrome patterned macular dystrophy 2 patterned dystrophy of the retinal pigment epithelium gastrointestinal stromal tumor lymphoplasmacytic lymphoma malignant pancreatic neoplasm myopathy ovarian cancer pancreatic intraductal papillary-mucinous neoplasm astrocytic tumor dermatomyositis primitive neuroectodermal tumor gastric carcinoma Hematopoetic Myelodysplasia invasive ductal breast carcinoma malignant ependymoma medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma atypical teratoid rhabdoid tumor pilocytic astrocytoma psoriasis exocrine pancreatic carcinoma hereditary diffuse gastric adenocarcinoma large cell medulloblastoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma patterned macular dystrophy autism spectrum disorder plasma cell myeloma gastric cancer glioblastoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	HIC	Parent Component: HIS RESID: AA0317 PSI-MOD : 1'-methyl-L-histidine MOD:00322

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.