6UPL
Structure of FACT_subnucleosome complex 2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | Core histone-like | 8066267 | 3001387 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | PH domain-like | 8103657 | 3000134 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | PH domain-like | 8103651 | 3000134 | SCOP2B (2022-06-29) |
J [auth H] | SCOP2B Superfamily | PH domain-like | 8084337 | 3000134 | SCOP2B (2022-06-29) |
J [auth H] | SCOP2B Superfamily | PH domain-like | 8103658 | 3000134 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Core histone-like | 8067138 | 3001387 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | Core histone-like | 8067138 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00125 | e6uplA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
E | PF00125 | e6uplE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
B | PF15511 | e6uplB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
F | PF15511 | e6uplF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
D | PF00125 | e6uplD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
H [auth L] | PF00125 | e6uplL1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
J [auth H] | PF03531 | e6uplH4 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PF03531 | ECOD (1.6) |
J [auth H] | PF08512 | e6uplH3 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PF08512 | ECOD (1.6) |
J [auth H] | PF17292 | e6uplH2 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PF17292 | ECOD (1.6) |
J [auth H] | PF21103 | e6uplH1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PF21103 | ECOD (1.6) |
C | PF00125,PF16211 | e6uplC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
G [auth K] | PF00125,PF16211 | e6uplK1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain | |
PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |
D, H [auth L] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
I [auth G] | PF08644 | FACT complex subunit (SPT16/CDC68) (SPT16) | FACT complex subunit (SPT16/CDC68) | Proteins in this family are subunits the FACT complex. The FACT complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin [2]. | Domain |
I [auth G] | PF08512 | Histone chaperone Rttp106-like, middle domain (Rttp106-like_middle) | Histone chaperone Rttp106-like, middle domain | This Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin tran ... | Domain |
J [auth H] | PF21103 | SSRP1 PH domain (PH1_SSRP1-like) | SSRP1 PH domain | SSRP1 is a component of FACT (facilitator of chromatin transcription), an essential chromatin reorganizing factor. This entry represents the first of two PH-like domains in these proteins. | Domain |
J [auth H] | PF03531 | Structure-specific recognition protein (SSRP1) (SSrecog) | Structure-specific recognition protein (SSRP1) | SSRP1 has been implicated in transcriptional initiation and elongation and in DNA replication and repair [1]. This domain belongs to the Pleckstrin homology fold superfamily. | Domain |
J [auth H] | PF08512 | Histone chaperone Rttp106-like, middle domain (Rttp106-like_middle) | Histone chaperone Rttp106-like, middle domain | This Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin tran ... | Domain |
J [auth H] | PF17292 | POB3-like N-terminal PH domain (POB3_N) | POB3-like N-terminal PH domain | This domain is found at the N-terminus of POB3 and related proteins. | Domain |
C, G [auth K] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
C, G [auth K] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |