Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyCore histone-like8067138 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like8066267 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like8039340 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like8070545 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPH domain-like8103651 3000134 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPH domain-like8103657 3000134 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPH domain-like8084337 3000134 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPH domain-like8103658 3000134 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF00125,PF16211e6upkC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
DPF00125e6upkD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
APF00125e6upkA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
EPF00125e6upkE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
BPF15511e6upkB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
FPF15511e6upkF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
HPF03531e6upkH4 A: beta barrelsX: PH domain-likeH: PH domain-like (From Topology)T: PH domain-likeF: PF03531ECOD (1.6)
HPF08512e6upkH3 A: beta barrelsX: PH domain-likeH: PH domain-like (From Topology)T: PH domain-likeF: PF08512ECOD (1.6)
HPF17292e6upkH2 A: beta barrelsX: PH domain-likeH: PH domain-like (From Topology)T: PH domain-likeF: PF17292ECOD (1.6)
HPF21103e6upkH1 A: beta barrelsX: PH domain-likeH: PH domain-like (From Topology)T: PH domain-likeF: PF21103ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
A, E
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
PF08644FACT complex subunit (SPT16/CDC68) (SPT16)FACT complex subunit (SPT16/CDC68)Proteins in this family are subunits the FACT complex. The FACT complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin [2].Domain
PF08512Histone chaperone Rttp106-like, middle domain (Rttp106-like_middle)Histone chaperone Rttp106-like, middle domainThis Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin tran ...This Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin transactions) complex subunits, such as Spt16 and either Pob3 (yeast) or the related SSRP1 (higher eukaryotes). This domain plays a role in DNA binding [2-4].
Domain
PF21103SSRP1 PH domain (PH1_SSRP1-like)SSRP1 PH domainSSRP1 is a component of FACT (facilitator of chromatin transcription), an essential chromatin reorganizing factor. This entry represents the first of two PH-like domains in these proteins.Domain
PF03531Structure-specific recognition protein (SSRP1) (SSrecog)Structure-specific recognition protein (SSRP1)SSRP1 has been implicated in transcriptional initiation and elongation and in DNA replication and repair [1]. This domain belongs to the Pleckstrin homology fold superfamily.Domain
PF08512Histone chaperone Rttp106-like, middle domain (Rttp106-like_middle)Histone chaperone Rttp106-like, middle domainThis Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin tran ...This Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin transactions) complex subunits, such as Spt16 and either Pob3 (yeast) or the related SSRP1 (higher eukaryotes). This domain plays a role in DNA binding [2-4].
Domain
PF17292POB3-like N-terminal PH domain (POB3_N)POB3-like N-terminal PH domainThis domain is found at the N-terminus of POB3 and related proteins.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone H2A
Histone H2B
DNA (79-mer)---
A, E
Histone H3.1
B, F
Histone H4
FACT complex subunit SPT16
FACT complex subunit SSRP1
DNA (79-mer)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR002119Histone H2AFamily
IPR032454Histone H2A, C-terminal domainDomain
IPR032458Histone H2A conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR000558Histone H2BFamily
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Histone H2A/H2B/H3Domain
A, E
IPR000164Histone H3/CENP-AFamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR033825FACT complex subunit Spt16, peptidase M24-like domainDomain
IPR048969FACT complex subunit SPT16, C-terminal domainDomain
IPR029149Creatinase/Aminopeptidase P/Spt16, N-terminalHomologous Superfamily
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR013719Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domainDomain
IPR040258FACT complex subunit Spt16Family
IPR029148FACT complex subunit Spt16, N-terminal lobe domainDomain
IPR013953FACT complex subunit Spt16 domainDomain
IPR036005Creatinase/aminopeptidase-likeHomologous Superfamily
IPR000994Peptidase M24Domain
IPR038167SSRP1 domain superfamilyHomologous Superfamily
IPR048985FACT complex subunit SSRP1, C-terminal domainDomain
IPR035417FACT complex subunit SSRP1/POB3, N-terminal PH domainDomain
IPR000969FACT complex subunit SSRP1/POB3Family
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR013719Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domainDomain
IPR048993FACT complex subunit SSRP1-like, first PH domainDomain
IPR024954SSRP1, dimerization domainDomain
IPR009071High mobility group box domainDomain
IPR036910High mobility group box domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ93077
PharosP62807
A, E
PharosP68431
B, F
PharosP62805
PharosQ9Y5B9
PharosQ08945