6ULM | pdb_00006ulm

Crystal structure of human cadherin 17 EC1-2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	Cadherin	e6ulmA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)
A [auth B]	Cadherin	e6ulmB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cadherin	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Cadherin-17	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding active transmembrane transporter activity transporter activity proton-dependent oligopeptide secondary active transmembrane transporter activity transmembrane transporter activity secondary active transmembrane transporter activity cell adhesion molecule binding protein-containing complex binding protein binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding active transmembrane transporter activity transporter activity proton-dependent oligopeptide secondary active transmembrane transporter activity transmembrane transporter activity secondary active transmembrane transporter activity cell adhesion molecule binding protein-containing complex binding protein binding integrin binding signaling receptor binding cadherin binding beta-catenin binding	adherens junction organization cellular component organization cell junction organization cellular process cellular component organization or biogenesis cell-cell junction organization peptide transport transmembrane transport oligopeptide transmembrane transport localization nitrogen compound transport amide transport transport oligopeptide transport adherens junction organization cellular component organization cell junction organization cellular process cellular component organization or biogenesis cell-cell junction organization peptide transport transmembrane transport oligopeptide transmembrane transport localization nitrogen compound transport amide transport transport oligopeptide transport establishment of localization cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication signal transduction cell migration cell motility cell adhesion cell-cell adhesion cell-cell adhesion mediated by cadherin cellular component biogenesis cellular component assembly cell junction assembly cell-cell junction assembly positive regulation of cellular component organization regulation of cellular component organization positive regulation of biological process positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly protein-containing complex assembly regulation of integrin activation positive regulation of integrin activation positive regulation of cellular process protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis positive regulation of integrin activation by cell surface receptor linked signal transduction integrin activation developmental process immune system development multicellular organism development multicellular organismal process spleen development immune system process animal organ development anatomical structure development hematopoietic or lymphoid organ development system development anatomical structure morphogenesis cell morphogenesis cellular developmental process germinal center B cell differentiation cell development mononuclear cell differentiation mature B cell differentiation B cell activation involved in immune response lymphocyte activation cell activation involved in immune response lymphocyte differentiation leukocyte activation B cell differentiation cell differentiation leukocyte activation involved in immune response lymphocyte activation involved in immune response mature B cell differentiation involved in immune response immune response hemopoiesis B cell activation cell activation immune effector process leukocyte differentiation marginal zone B cell differentiation homophilic cell-cell adhesion calcium-dependent cell-cell adhesion	cellular anatomical structure cell junction cell surface cell periphery plasma membrane membrane basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex cellular anatomical structure cell junction cell surface cell periphery plasma membrane membrane basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane protein complex extrinsic component of membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cell-cell junction adherens junction anchoring junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR039808	Cadherin	Family
A [auth B], B [auth A]	IPR020894	Cadherin conserved site	Conserved Site
A [auth B], B [auth A]	IPR002126	Cadherin-like	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth A]	Pharos: Q12864	occupational asthma Barrett esophagus digestive system disease major affective disorder 2 Psychotic Disorders bipolar disorder esophageal adenocarcinoma malignant pancreatic neoplasm pancreatic intraductal papillary-mucinous carcinoma Sjogren syndrome cancer heart disease pancreatic intraductal papillary-mucinous neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.