6U48 | pdb_00006u48

E. coli 50S with phazolicin (PHZ) bound in exit tunnel


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth CN]SCOP2 FamilyRibosomal protein L16p 8097997 4003717 SCOP2 (2022-06-29)
M [auth CN]SCOP2 SuperfamilyRibosomal protein L16p/L10e 8097998 3000884 SCOP2 (2022-06-29)
M [auth CN]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
S [auth CT]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
I [auth CJ]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
I [auth CJ]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
H [auth CH]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
H [auth CH]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
G [auth CG]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
G [auth CG]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
F [auth CF]SCOP2 FamilyRibosomal protein L5 8100893 4001498 SCOP2 (2022-06-29)
F [auth CF]SCOP2 SuperfamilyRL5-like 8100894 3001709 SCOP2 (2022-06-29)
F [auth CF]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
E [auth CE]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
D [auth CD]SCOP2 FamilyRibosomal protein L3 8093451 4002103 SCOP2 (2022-06-29)
D [auth CD]SCOP2 SuperfamilyTranslational proteins 8093452 3000811 SCOP2 (2022-06-29)
D [auth CD]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
EA [auth C5]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
DA [auth C4]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
C [auth CC]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
C [auth CC]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
BA [auth C2]SCOP2 FamilyRibosomal protein L33p 8093585 4000511 SCOP2 (2022-06-29)
BA [auth C2]SCOP2 SuperfamilyZn-binding ribosomal proteins 8093586 3001320 SCOP2 (2022-06-29)
BA [auth C2]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
AA [auth C1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
Z [auth C0]SCOP2 FamilyRibosomal protein L30p/L7e 8096085 4001360 SCOP2 (2022-06-29)
Z [auth C0]SCOP2 SuperfamilyRibosomal protein L30p/L7e 8096086 3001378 SCOP2 (2022-06-29)
Z [auth C0]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
Y [auth CZ]SCOP2 FamilyRibosomal protein L29 (L29p) 8097647 4000600 SCOP2 (2022-06-29)
Y [auth CZ]SCOP2 SuperfamilyRibosomal protein L29 (L29p) 8097648 3000713 SCOP2 (2022-06-29)
Y [auth CZ]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
X [auth CY]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
W [auth CX]SCOP2 FamilyRibosomal L27 protein 8093453 4001900 SCOP2 (2022-06-29)
W [auth CX]SCOP2 SuperfamilyRibosomal L27 protein-like 8093454 3000539 SCOP2 (2022-06-29)
W [auth CX]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
V [auth CW]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
U [auth CV]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
T [auth CU]SCOP2 FamilyL23p 8093561 4000943 SCOP2 (2022-06-29)
T [auth CU]SCOP2 SuperfamilyRibosomal proteins S24e, L23 and L15e 8093562 3000210 SCOP2 (2022-06-29)
T [auth CU]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
R [auth CS]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
Q [auth CR]SCOP2 FamilyRibosomal protein L20 8097929 4001930 SCOP2 (2022-06-29)
Q [auth CR]SCOP2 SuperfamilyRibosomal protein L20 8097930 3000563 SCOP2 (2022-06-29)
Q [auth CR]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
P [auth CQ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
O [auth CP]SCOP2 FamilyRibosomal protein L18p and S11 8097939 4000555 SCOP2 (2022-06-29)
O [auth CP]SCOP2 SuperfamilyTranslational machinery components 8097940 3000571 SCOP2 (2022-06-29)
O [auth CP]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
N [auth CO]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
L [auth CM]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
K [auth CL]SCOP2 FamilyRibosomal protein L14 8096341 4001826 SCOP2 (2022-06-29)
K [auth CL]SCOP2 Superfamily50S Ribosomal protein L14-like 8096342 3000433 SCOP2 (2022-06-29)
K [auth CL]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
J [auth CK]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth CN]Ribosomal_L16e6u48CN1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
S [auth CT]Ribosomal_L22e6u48CT1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
I [auth CJ]Ribosomal_L11e6u48CJ2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
I [auth CJ]Ribosomal_L11_Ne6u48CJ1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
H [auth CH]Ribosomal_L9_Ne6u48CH2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
H [auth CH]Ribosomal_L9_C_1e6u48CH1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
G [auth CG]Ribosomal_L6e6u48CG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
G [auth CG]Ribosomal_L6_1e6u48CG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
F [auth CF]Ribosomal_L5_Ce6u48CF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
E [auth CE]Ribosomal_L4e6u48CE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
D [auth CD]Ribosomal_L3e6u48CD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
EA [auth C5]Ribosomal_L36e6u48C51 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
DA [auth C4]Ribosomal_L35pe6u48C41 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
C [auth CC]Ribosomal_L2_1e6u48CC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
C [auth CC]Ribosomal_L2_Ce6u48CC2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
CA [auth C3]Ribosomal_L34e6u48C31 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
BA [auth C2]Ribosomal_L33e6u48C21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
AA [auth C1]Ribosomal_L32pe6u48C11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
Z [auth C0]Ribosomal_L30e6u48C01 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
Y [auth CZ]Ribosomal_L29e6u48CZ1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
X [auth CY]Ribosomal_L28e6u48CY1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
W [auth CX]Ribosomal_L27e6u48CX1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
V [auth CW]Ribosomal_L25pe6u48CW1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
U [auth CV]ribosomal_L24_1e6u48CV1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
T [auth CU]Ribosomal_L23_2e6u48CU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
R [auth CS]Ribosomal_L21pe6u48CS1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
Q [auth CR]Ribosomal_L20e6u48CR1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
P [auth CQ]Ribosomal_L19e6u48CQ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
O [auth CP]Ribosomal_L18pe6u48CP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
N [auth CO]Ribosomal_L17_1e6u48CO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
L [auth CM]Ribosomal_L27Ae6u48CM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
K [auth CL]Ribosomal_L14e6u48CL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
J [auth CK]Ribosomal_L13e6u48CK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth CN]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
S [auth CT]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
I [auth CJ]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
I [auth CJ]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
H [auth CH]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
H [auth CH]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
G [auth CG]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
F [auth CF]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
F [auth CF]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
E [auth CE]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
D [auth CD]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
EA [auth C5]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
DA [auth C4]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
C [auth CC]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
C [auth CC]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
CA [auth C3]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
BA [auth C2]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
AA [auth C1]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
Z [auth C0]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
Y [auth CZ]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
X [auth CY]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
W [auth CX]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
V [auth CW]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
U [auth CV]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
U [auth CV]PF00467KOW motif (KOW)KOW motif- Family
T [auth CU]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
R [auth CS]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Q [auth CR]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
P [auth CQ]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
O [auth CP]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
N [auth CO]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
L [auth CM]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
K [auth CL]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
J [auth CK]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth CN]50S ribosomal protein uL16
S [auth CT]50S ribosomal protein uL22
I [auth CJ]50S ribosomal protein uL11
H [auth CH]50S ribosomal protein bL9
G [auth CG]50S ribosomal protein uL6
F [auth CF]50S ribosomal protein uL5
E [auth CE]50S ribosomal protein uL4
D [auth CD]50S ribosomal protein uL3
FA [auth A]phazolicin---
EA [auth C5]50S ribosomal protein bL36
DA [auth C4]50S ribosomal protein bL35
C [auth CC]50S ribosomal protein uL2
CA [auth C3]50S ribosomal protein bL34
BA [auth C2]50S ribosomal protein bL33
AA [auth C1]50S ribosomal protein bL32
Z [auth C0]50S ribosomal protein uL30
Y [auth CZ]50S ribosomal protein uL29
X [auth CY]50S ribosomal protein bL28
W [auth CX]50S ribosomal protein bL27
V [auth CW]50S ribosomal protein bL25
U [auth CV]50S ribosomal protein uL24
T [auth CU]50S ribosomal protein uL23
B [auth CB]5S rRNA---
R [auth CS]50S ribosomal protein bL21
Q [auth CR]50S ribosomal protein bL20
P [auth CQ]50S ribosomal protein bL19
O [auth CP]50S ribosomal protein uL18
N [auth CO]50S ribosomal protein bL17
L [auth CM]50S ribosomal protein uL15
K [auth CL]50S ribosomal protein uL14
J [auth CK]50S ribosomal protein uL13
A [auth CA]23S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth CN]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
M [auth CN]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
M [auth CN]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
M [auth CN]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth CN]IPR047873Large ribosomal subunit protein uL16Family
S [auth CT]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
S [auth CT]IPR001063Large ribosomal subunit protein uL22Family
S [auth CT]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
S [auth CT]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
S [auth CT]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
I [auth CJ]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
I [auth CJ]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
I [auth CJ]IPR000911Ribosomal protein uL11Family
I [auth CJ]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
I [auth CJ]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
I [auth CJ]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
I [auth CJ]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
H [auth CH]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
H [auth CH]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
H [auth CH]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
H [auth CH]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
H [auth CH]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
H [auth CH]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
H [auth CH]IPR000244Large ribosomal subunit protein bL9Family
G [auth CG]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth CG]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth CG]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth CG]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
G [auth CG]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
F [auth CF]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
F [auth CF]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth CF]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth CF]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth CF]IPR002132Large ribosomal subunit protein uL5Family
F [auth CF]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
E [auth CE]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth CE]IPR002136Large ribosomal subunit protein uL4Family
E [auth CE]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
D [auth CD]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth CD]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
D [auth CD]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth CD]IPR000597Large ribosomal subunit protein uL3Family
EA [auth C5]IPR000473Large ribosomal subunit protein bL36Family
EA [auth C5]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
DA [auth C4]IPR021137Large ribosomal subunit protein bL35-likeFamily
DA [auth C4]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
DA [auth C4]IPR001706Large ribosomal subunit protein bL35Family
DA [auth C4]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
C [auth CC]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
C [auth CC]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth CC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth CC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth CC]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth CC]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth CC]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth CC]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth CC]IPR002171Large ribosomal subunit protein uL2Family
CA [auth C3]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
CA [auth C3]IPR000271Large ribosomal subunit protein bL34Family
BA [auth C2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth C2]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
BA [auth C2]IPR001705Large ribosomal subunit protein bL33Family
BA [auth C2]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
AA [auth C1]IPR002677Large ribosomal subunit protein bL32Family
AA [auth C1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth C1]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
Z [auth C0]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Z [auth C0]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
Z [auth C0]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Z [auth C0]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
Y [auth CZ]IPR050063Universal ribosomal protein uL29Family
Y [auth CZ]IPR001854Large ribosomal subunit protein uL29Family
Y [auth CZ]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Y [auth CZ]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
X [auth CY]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
X [auth CY]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
X [auth CY]IPR026569Large ribosomal subunit protein bL28Family
X [auth CY]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
W [auth CX]IPR001684Large ribosomal subunit protein bL27Family
W [auth CX]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
V [auth CW]IPR020055Ribosomal protein bL25, short-formFamily
V [auth CW]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
V [auth CW]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
V [auth CW]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
V [auth CW]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
U [auth CV]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth CV]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth CV]IPR003256Large ribosomal subunit protein uL24Family
U [auth CV]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth CV]IPR005824KOWDomain
U [auth CV]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
T [auth CU]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth CU]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth CU]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
T [auth CU]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth CS]IPR028909Large ribosomal subunit protein bL21-likeFamily
R [auth CS]IPR001787Large ribosomal subunit protein bL21Family
R [auth CS]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
R [auth CS]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Q [auth CR]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
Q [auth CR]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
Q [auth CR]IPR005813Large ribosomal subunit protein bL20Family
P [auth CQ]IPR001857Large ribosomal subunit protein bL19Family
P [auth CQ]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
P [auth CQ]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
P [auth CQ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth CP]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
O [auth CP]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
N [auth CO]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
N [auth CO]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
N [auth CO]IPR000456Large ribosomal subunit protein bL17Family
L [auth CM]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth CM]IPR030878Large ribosomal subunit protein uL15Family
L [auth CM]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
L [auth CM]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth CM]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
K [auth CL]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth CL]IPR000218Large ribosomal subunit protein uL14Family
K [auth CL]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
K [auth CL]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
J [auth CK]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
J [auth CK]IPR005822Large ribosomal subunit protein uL13Family
J [auth CK]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
J [auth CK]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
M [auth CN]4D4 Parent Component: ARG

D [auth CD]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
FA [auth A]A0G RESIDAA0071

FA [auth A]BB9 Parent Component: CYS

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

PSI-MOD :  N5-methyl-L-glutamine MOD:00080 , glycine thiazole-4-carboxylic acid MOD:00246 , L-serine thiazole-4-carboxylic acid MOD:00247 , L-phenylalanine thiazole-4-carboxylic acid MOD:00248 , L-cysteine thiazole-4-carboxylic acid MOD:00249 , L-isoleucine thiazole-4-carboxylic acid MOD:01389 , L-valine thiazole-4-carboxylic acid MOD:01390 , L-threonine thiazoline-4-carboxylic acid MOD:01408 , L-glutamate thiazole-4-carboxylic acid MOD:01815
A [auth CA]1MG Parent Component: G

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]2MA Parent Component: A

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]2MG Parent Component: G

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]3TD Parent Component: U

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]5MC Parent Component: C

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]5MU Parent Component: U

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]6MZ Parent Component: A

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]G7M Parent Component: G

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]H2U Parent Component: U

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]OMC Parent Component: C

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]OMG Parent Component: G

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]OMU Parent Component: U

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541

A [auth CA]PSU Parent Component: U

RESIDAA0071 , AA0241 , AA0242 , AA0243 , AA0244 , AA0466 , AA0467 , AA0485 , AA0541