6U3J | pdb_00006u3j

Structure of the 2-oxoadipate dehydrogenase DHTKD1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PK_Tyr_Ser-Thr	e6u3jB1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PK_Tyr_Ser-Thr	ECOD (develop294)
A	PK_Tyr_Ser-Thr	e6u3jA1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PK_Tyr_Ser-Thr	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02779	Transketolase, pyrimidine binding domain (Transket_pyr)	Transketolase, pyrimidine binding domain	This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases.	Domain
A, B	PF16870	2-oxoglutarate dehydrogenase C-terminal (OxoGdeHyase_C)	2-oxoglutarate dehydrogenase C-terminal	-	Family
A, B	PF00676	Dehydrogenase E1 component (E1_dh)	Dehydrogenase E1 component	This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor oxidoreductase activity 2-oxoadipate dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity cation binding vitamin binding thiamine pyrophosphate binding binding ion binding anion binding quaternary ammonium group binding heterocyclic compound binding small molecule binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor oxidoreductase activity 2-oxoadipate dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity cation binding vitamin binding thiamine pyrophosphate binding binding ion binding anion binding quaternary ammonium group binding heterocyclic compound binding small molecule binding sulfur compound binding	ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process cellular process purine ribonucleoside diphosphate catabolic process developmental process cellular developmental process hemopoiesis cell differentiation anatomical structure development cell development hematopoietic progenitor cell differentiation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle oxoadipate dehydrogenase complex protein-containing complex catalytic complex oxidoreductase complex transferase complex alpha-ketoacid dehydrogenase complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle oxoadipate dehydrogenase complex protein-containing complex catalytic complex oxidoreductase complex transferase complex alpha-ketoacid dehydrogenase complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042179	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR029061	Thiamin diphosphate-binding fold	Homologous Superfamily
A, B	IPR005475	Transketolase-like, pyrimidine-binding domain	Domain
A, B	IPR011603	2-oxoglutarate dehydrogenase E1 component	Family
A, B	IPR031717	2-oxoglutarate dehydrogenase E1 component/KDG, C-terminal	Domain
A, B	IPR001017	Dehydrogenase, E1 component	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q96HY7	2-aminoadipic 2-oxoadipic aciduria Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease axonal type 2Q peripheral neuropathy Liver Cirrhosis, Experimental invasive ductal breast carcinoma lung carcinoma neurodegenerative disease pancreatic ductal adenocarcinoma breast cancer osteosarcoma pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma breast carcinoma intellectual disability 2-aminoadipic 2-oxoadipic aciduria Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease axonal type 2Q peripheral neuropathy Liver Cirrhosis, Experimental invasive ductal breast carcinoma lung carcinoma neurodegenerative disease pancreatic ductal adenocarcinoma breast cancer osteosarcoma pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma breast carcinoma intellectual disability lung adenocarcinoma motor peripheral neuropathy ovarian cancer peripheral nervous system disease

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	MLZ	Parent Component: LYS RESID: AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.