6TZ1 | pdb_00006tz1

In situ structure of BmCPV RNA-dependent RNA polymerase at early-elongation state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	AAA_33_like	e6tz1B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA_33_like	ECOD (1.6)
B	EUF08661	e6tz1B2	A: mixed a+b and a/b	X: Viral structural protein 4 N-terminal domain (From Topology)	H: Viral structural protein 4 N-terminal domain (From Topology)	T: Viral structural protein 4 N-terminal domain	F: EUF08661	ECOD (1.6)
A	EUF08096	e6tz1A2	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: EUF08096	ECOD (1.6)
A	EUF08251	e6tz1A3	A: alpha complex topology	X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: EUF08251	ECOD (1.6)
A	EUF08252	e6tz1A4	A: alpha complex topology	X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology)	H: N-terminal additional helical subdomain in reovirus polymerase lambda3	T: N-terminal additional helical subdomain in reovirus polymerase lambda3	F: EUF08252	ECOD (1.6)
A	EUF08358	e6tz1A1	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: EUF08358	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth T]	Template RNA (5'-R(PAPGPAPAPAPAPAPAPAPAP*A)-3')	-	-	-
D [auth N]	Non-template RNA (5'-D((GTA))-R(PGPUPA)-3')	-	-	-
C [auth M]	Transcript (5'-R(PUPUPUPUPUPCPCPCP*U)-3')	-	-	-
B	Viral structural protein 4	-	-	-
A	RNA-dependent RNA Polymerase	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding	viral genome replication viral process viral life cycle	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR054006	RNA-directed RNA polymerase, N-terminal	Domain
A	IPR054002	RNA-directed RNA polymerase, C-terminal	Domain
A	IPR007097	RNA-directed RNA polymerase, reovirus	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.