6TA6 | pdb_00006ta6

MexAB assembly of the Pseudomonas MexAB-OprM efflux pump reconstituted in nanodiscs

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
AMR Gene: CARD Annotation
AMR Gene Family: CARD Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	HlyD C-terminal domain-like	8092210	3002572	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	HlyD C-terminal domain-like	8092210	3002572	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	HlyD C-terminal domain-like	8092210	3002572	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HlyD C-terminal domain-like	8092210	3002572	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	HlyD C-terminal domain-like	8092210	3002572	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HlyD C-terminal domain-like	8092210	3002572	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Single hybrid motif	8055550	3001880	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HlyD beta-barrel domain-like	8041312	3002000	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Outer membrane efflux proteins (OEP)	8043654	3000246	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Outer membrane efflux proteins (OEP)	8043654	3000246	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Outer membrane efflux proteins (OEP)	8043654	3000246	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	ACR_tran_4th	e6ta6L2	A: alpha bundles	X: Multidrug efflux transporter AcrB transmembrane domain (From Topology)	H: Multidrug efflux transporter AcrB transmembrane domain (From Topology)	T: Multidrug efflux transporter AcrB transmembrane domain	F: ACR_tran_4th	ECOD (1.6)
L	ACR_tran_1st	e6ta6L8	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_1st	ECOD (1.6)
L	ACR_tran_5th	e6ta6L4	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_5th	ECOD (1.6)
L	ACR_tran_3rd	e6ta6L3	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_3rd	ECOD (1.6)
L	ACR_tran_6th	e6ta6L7	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_6th	ECOD (1.6)
L	ACR_tran_2nd	e6ta6L1	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB TolC docking domain	F: ACR_tran_2nd	ECOD (1.6)
L	ACR_tran_6th_1	e6ta6L6	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB TolC docking domain	F: ACR_tran_6th_1	ECOD (1.6)
K	ACR_tran_4th	e6ta6K5	A: alpha bundles	X: Multidrug efflux transporter AcrB transmembrane domain (From Topology)	H: Multidrug efflux transporter AcrB transmembrane domain (From Topology)	T: Multidrug efflux transporter AcrB transmembrane domain	F: ACR_tran_4th	ECOD (1.6)
K	ACR_tran_1st	e6ta6K4	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_1st	ECOD (1.6)
K	ACR_tran_5th	e6ta6K6	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_5th	ECOD (1.6)
K	ACR_tran_3rd	e6ta6K1	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_3rd	ECOD (1.6)
K	ACR_tran_6th	e6ta6K3	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_6th	ECOD (1.6)
K	ACR_tran_2nd	e6ta6K8	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB TolC docking domain	F: ACR_tran_2nd	ECOD (1.6)
K	ACR_tran_6th_1	e6ta6K2	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB TolC docking domain	F: ACR_tran_6th_1	ECOD (1.6)
J	ACR_tran_4th	e6ta6J6	A: alpha bundles	X: Multidrug efflux transporter AcrB transmembrane domain (From Topology)	H: Multidrug efflux transporter AcrB transmembrane domain (From Topology)	T: Multidrug efflux transporter AcrB transmembrane domain	F: ACR_tran_4th	ECOD (1.6)
J	ACR_tran_1st	e6ta6J4	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_1st	ECOD (1.6)
J	ACR_tran_5th	e6ta6J3	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_5th	ECOD (1.6)
J	ACR_tran_3rd	e6ta6J5	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_3rd	ECOD (1.6)
J	ACR_tran_6th	e6ta6J8	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB pore domain	F: ACR_tran_6th	ECOD (1.6)
J	ACR_tran_2nd	e6ta6J7	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB TolC docking domain	F: ACR_tran_2nd	ECOD (1.6)
J	ACR_tran_6th_1	e6ta6J2	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin domains in multidrug efflux transporter	T: Multidrug efflux transporter AcrB TolC docking domain	F: ACR_tran_6th_1	ECOD (1.6)
I	PRK15030_2nd	e6ta6I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PRK15030_2nd	ECOD (1.6)
I	HlyD_D23_C_1	e6ta6I4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C_1	ECOD (1.6)
I	PRK15030_1st	e6ta6I2	A: alpha bundles	X: helical hairpin of HlyD-like secretion proteins (From Topology)	H: helical hairpin of HlyD-like secretion proteins (From Topology)	T: helical hairpin of HlyD-like secretion proteins	F: PRK15030_1st	ECOD (1.6)
I	HlyD_1st	e6ta6I3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: HlyD_1st	ECOD (1.6)
H	PRK15030_2nd	e6ta6H4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PRK15030_2nd	ECOD (1.6)
H	HlyD_D23_C_1	e6ta6H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C_1	ECOD (1.6)
H	PRK15030_1st	e6ta6H3	A: alpha bundles	X: helical hairpin of HlyD-like secretion proteins (From Topology)	H: helical hairpin of HlyD-like secretion proteins (From Topology)	T: helical hairpin of HlyD-like secretion proteins	F: PRK15030_1st	ECOD (1.6)
H	HlyD_1st	e6ta6H2	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: HlyD_1st	ECOD (1.6)
G	PRK15030_2nd	e6ta6G4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PRK15030_2nd	ECOD (1.6)
G	HlyD_D23_C_1	e6ta6G2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C_1	ECOD (1.6)
G	PRK15030_1st	e6ta6G3	A: alpha bundles	X: helical hairpin of HlyD-like secretion proteins (From Topology)	H: helical hairpin of HlyD-like secretion proteins (From Topology)	T: helical hairpin of HlyD-like secretion proteins	F: PRK15030_1st	ECOD (1.6)
G	HlyD_1st	e6ta6G1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: HlyD_1st	ECOD (1.6)
F	PRK15030_2nd	e6ta6F2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PRK15030_2nd	ECOD (1.6)
F	HlyD_D23_C_1	e6ta6F4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C_1	ECOD (1.6)
F	PRK15030_1st	e6ta6F1	A: alpha bundles	X: helical hairpin of HlyD-like secretion proteins (From Topology)	H: helical hairpin of HlyD-like secretion proteins (From Topology)	T: helical hairpin of HlyD-like secretion proteins	F: PRK15030_1st	ECOD (1.6)
F	HlyD_1st	e6ta6F3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: HlyD_1st	ECOD (1.6)
E	PRK15030_2nd	e6ta6E2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PRK15030_2nd	ECOD (1.6)
E	HlyD_D23_C_1	e6ta6E3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C_1	ECOD (1.6)
E	PRK15030_1st	e6ta6E4	A: alpha bundles	X: helical hairpin of HlyD-like secretion proteins (From Topology)	H: helical hairpin of HlyD-like secretion proteins (From Topology)	T: helical hairpin of HlyD-like secretion proteins	F: PRK15030_1st	ECOD (1.6)
E	HlyD_1st	e6ta6E1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: HlyD_1st	ECOD (1.6)
D	PRK15030_2nd	e6ta6D3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PRK15030_2nd	ECOD (1.6)
D	HlyD_D23_C_1	e6ta6D4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C_1	ECOD (1.6)
D	PRK15030_1st	e6ta6D2	A: alpha bundles	X: helical hairpin of HlyD-like secretion proteins (From Topology)	H: helical hairpin of HlyD-like secretion proteins (From Topology)	T: helical hairpin of HlyD-like secretion proteins	F: PRK15030_1st	ECOD (1.6)
D	HlyD_1st	e6ta6D1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: HlyD_1st	ECOD (1.6)
C	OEP	e6ta6C1	A: a+b duplicates or obligate multimers	X: Outer membrane efflux proteins (OEP) (From Topology)	H: Outer membrane efflux proteins (OEP) (From Topology)	T: Outer membrane efflux proteins (OEP)	F: OEP	ECOD (1.6)
B	OEP	e6ta6B1	A: a+b duplicates or obligate multimers	X: Outer membrane efflux proteins (OEP) (From Topology)	H: Outer membrane efflux proteins (OEP) (From Topology)	T: Outer membrane efflux proteins (OEP)	F: OEP	ECOD (1.6)
A	OEP	e6ta6A1	A: a+b duplicates or obligate multimers	X: Outer membrane efflux proteins (OEP) (From Topology)	H: Outer membrane efflux proteins (OEP) (From Topology)	T: Outer membrane efflux proteins (OEP)	F: OEP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.2090.10	Alpha Beta	2-Layer Sandwich	Multidrug efflux transporter AcrB TolC docking domain	DN and DC subdomains	CATH (utative)
K	3.30.2090.10	Alpha Beta	2-Layer Sandwich	Multidrug efflux transporter AcrB TolC docking domain	DN and DC subdomains	CATH (utative)
J	3.30.2090.10	Alpha Beta	2-Layer Sandwich	Multidrug efflux transporter AcrB TolC docking domain	DN and DC subdomains	CATH (utative)
G	1.10.287.470	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (utative)
E	1.10.287.470	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (utative)

AMR Gene: CARD Annotation CARD Database Homepage

Chains	Accession	Short Name	Description	Provenance Source (Version)
A, B, C	ARO:3000379	OprM	OprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM, MexVW-OprM, MexXY-OprM and the AmrAB-OprM complex.	CARD (4.0.1)

AMR Gene Family: CARD Annotation CARD Database Homepage

Chains	Accession	Gene Family	Drug Class	Resistance Machanism	Provenance Source (Version)
A, B, C	ARO:0010004	resistance-nodulation-cell division (RND) antibiotic efflux pump	macrolide antibiotic, fluoroquinolone antibiotic, aminoglycoside antibiotic, carbapenem, cephalosporin, penicillin beta-lactam, tetracycline antibiotic, phenicol antibiotic, disinfecting agents and antiseptics	antibiotic efflux	CARD (4.0.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J, K, L	PF00873	AcrB/AcrD/AcrF family (ACR_tran)	AcrB/AcrD/AcrF family	-	Family
A, B, C	PF02321	Outer membrane efflux protein (OEP)	Outer membrane efflux protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J, K, L	Efflux pump membrane transporter	efflux transmembrane transporter activity transporter activity transmembrane transporter activity xenobiotic transmembrane transporter activity	xenobiotic transport response to stimulus transport detoxification export across cell outer membrane xenobiotic detoxification by transmembrane export across the cell outer membrane establishment of localization response to toxic substance transmembrane transport localization response to chemical cellular process response to antibiotic	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex efflux pump complex transmembrane transporter complex membrane protein complex transporter complex
D, E, F, G, H D, E, F, G, H, I	MexA family multidrug efflux RND transporter periplasmic adaptor subunit	efflux transmembrane transporter activity transporter activity transmembrane transporter activity identical protein binding protein binding binding	xenobiotic transport response to stimulus transport detoxification export across cell outer membrane xenobiotic detoxification by transmembrane export across the cell outer membrane establishment of localization response to toxic substance transmembrane transport localization response to chemical cellular process cellular component organization cellular component biogenesis xenobiotic transport response to stimulus transport detoxification export across cell outer membrane xenobiotic detoxification by transmembrane export across the cell outer membrane establishment of localization response to toxic substance transmembrane transport localization response to chemical cellular process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis response to antibiotic	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex efflux pump complex transmembrane transporter complex membrane protein complex transporter complex
A, B, C	Outer membrane protein OprM	efflux transmembrane transporter activity transporter activity transmembrane transporter activity	xenobiotic transport response to stimulus transport detoxification export across cell outer membrane xenobiotic detoxification by transmembrane export across the cell outer membrane establishment of localization response to toxic substance transmembrane transport localization response to chemical cellular process response to antibiotic	cellular anatomical structure membrane protein-containing complex efflux pump complex transmembrane transporter complex membrane protein complex transporter complex cell periphery cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J, K, L	IPR001036	Acriflavin resistance protein	Family
J, K, L	IPR004764	Multidrug resistance protein MdtF-like	Family
J, K, L	IPR027463	Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	Homologous Superfamily
D, E, F, G, H D, E, F, G, H, I	IPR043602	CusB-like_dom_1	Unknown
D, E, F, G, H D, E, F, G, H, I	IPR051160	MFP_Efflux	Unknown
D, E, F, G, H D, E, F, G, H, I	IPR032317	CusB_D23	Unknown
D, E, F, G, H D, E, F, G, H, I	IPR006143	RND efflux pump, membrane fusion protein	Family
A, B, C	IPR050737	OMF	Unknown
A, B, C	IPR003423	Outer membrane efflux protein	Family
A, B, C	IPR010131	Multidrug resistance outer membrane protein MdtP/Nodulation protein T-like	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	OPM	Transmembrane	Alpha-helical polytopic	Resistance-nodulation-cell division	Hydrophobe/amphiphile efflux-1 family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Multi-Drug Efflux Transporters	MexAB bacterial multi-drug efflux transporter in nanodisc