6T8G | pdb_00006t8g

Stalled FtsK motor domain bound to dsDNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyRecA-like P-loop NTPases 8003565 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyFtsK alpha domain-like 8056469 3002347 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyFtsK alpha domain-like 8056469 3002347 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRecA-like P-loop NTPases 8003565 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases 8003565 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFtsK alpha domain-like 8056469 3002347 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8003565 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFtsK alpha domain-like 8056469 3002347 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8003565 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFtsK alpha domain-like 8056469 3002347 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8003565 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyFtsK alpha domain-like 8056469 3002347 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FATP-synte6t8gF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
EATP-synte6t8gE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
DATP-synte6t8gD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
CATP-synte6t8gC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
BATP-synte6t8gB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
AATP-synte6t8gA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01580FtsK/SpoIIIE family (FtsK_SpoIIIE)FtsK/SpoIIIE familyFtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids [1], termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. col ...FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids [1], termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli Swiss:P46889 and the stage III sporulation protein E SpoIIIE Swiss:P21458 which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification [1]. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer [1].
Domain
A, B, C, D, E
PF17854FtsK alpha domain (FtsK_alpha)FtsK alpha domainFtsK is a DNA translocase that coordinates chromosome segregation and cell division in bacteria [1]. In addition to its role as activator of XerCD site-specific recombination, FtsK can translocate double-stranded DNA (dsDNA) rapidly and directionally ...FtsK is a DNA translocase that coordinates chromosome segregation and cell division in bacteria [1]. In addition to its role as activator of XerCD site-specific recombination, FtsK can translocate double-stranded DNA (dsDNA) rapidly and directionally and reverse direction [1]. FtsK can be split into three domains called alpha (this entry), beta and gamma. The alpha and beta domains contain the core ATPase machinery of the DNA translocase [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR050206FtsK/SpoIIIE/SftA cell division and DNA translocationFamily
A, B, C, D, E
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR018541FtsK gamma domainDomain
A, B, C, D, E
IPR041027FtsK alpha domainDomain
A, B, C, D, E
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR025199DNA translocase FtsK, 4TM regionDomain
A, B, C, D, E
IPR002543FtsK domainDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily