6T61 | pdb_00006t61

A model of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH8

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Histone	e6t61A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
B	Histone	e6t61B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
C	Histone	e6t61C1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
D [auth F]	Histone	e6t61F1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
E [auth D]	Histone	e6t61D1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
F [auth H]	Histone	e6t61H1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
G [auth I]	Histone	e6t61I1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
H [auth E]	Histone	e6t61E1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
I [auth G]	Histone	e6t61G1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
J	Histone	e6t61J1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
K	Histone	e6t61K1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
L	Histone	e6t61L1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
M [auth O]	Histone	e6t61O1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
N [auth M]	Histone	e6t61M1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
P [auth R]	Histone	e6t61R1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
Q [auth N]	Histone	e6t61N1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
R [auth P]	Histone	e6t61P1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)
O [auth Q]	Histone	e6t61Q1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Histone	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	Gag polyprotein	binding nucleic acid binding structural constituent of virion structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle	viral nucleocapsid viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR014834	Gag protein p15	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR050195	Primate lentivirus group Gag polyprotein-like	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR001878	Zinc finger, CCHC-type	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR010999	Retroviral matrix protein	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR012344	Matrix protein, lentiviral and alpha-retroviral, N-terminal	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.