6T61

A model of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH8

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF19317	e6t61A2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
A	F_UNCLASSIFIED	e6t61A1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
B	PF19317	e6t61B2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
B	F_UNCLASSIFIED	e6t61B1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
C	PF19317	e6t61C2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
C	F_UNCLASSIFIED	e6t61C1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth F]	PF19317	e6t61F1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
D [auth F]	F_UNCLASSIFIED	e6t61F2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth D]	PF19317	e6t61D2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
E [auth D]	F_UNCLASSIFIED	e6t61D1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth H]	PF19317	e6t61H2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
F [auth H]	F_UNCLASSIFIED	e6t61H1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
G [auth I]	PF19317	e6t61I2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
G [auth I]	F_UNCLASSIFIED	e6t61I1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
H [auth E]	PF19317	e6t61E2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
H [auth E]	F_UNCLASSIFIED	e6t61E1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
I [auth G]	PF19317	e6t61G2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
I [auth G]	F_UNCLASSIFIED	e6t61G1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
J	PF19317	e6t61J2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
J	F_UNCLASSIFIED	e6t61J1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
K	PF19317	e6t61K2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
K	F_UNCLASSIFIED	e6t61K1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
L	PF19317	e6t61L2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
L	F_UNCLASSIFIED	e6t61L1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
M [auth O]	PF19317	e6t61O1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
M [auth O]	F_UNCLASSIFIED	e6t61O2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
N [auth M]	PF19317	e6t61M2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
N [auth M]	F_UNCLASSIFIED	e6t61M1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
O [auth Q]	PF19317	e6t61Q1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
O [auth Q]	F_UNCLASSIFIED	e6t61Q2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
P [auth R]	PF19317	e6t61R2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
P [auth R]	F_UNCLASSIFIED	e6t61R1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
Q [auth N]	PF19317	e6t61N2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
Q [auth N]	F_UNCLASSIFIED	e6t61N1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
R [auth P]	PF19317	e6t61P2	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein-C (From Topology)	T: Retrovirus capsid protein-C	F: PF19317	ECOD (1.6)
R [auth P]	F_UNCLASSIFIED	e6t61P1	A: alpha bundles	X: Retrovirus capsid protein	H: Retrovirus capsid protein N-terminal domain (From Topology)	T: Retrovirus capsid protein N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	PF19317	Gag protein p24 C-terminal domain (Gag_p24_C)	Gag protein p24 C-terminal domain	p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	Gag polyprotein	binding organic cyclic compound binding nucleic acid binding structural constituent of virion structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle	viral nucleocapsid viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR014834	Gag protein p15	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR001878	Zinc finger, CCHC-type	Domain
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR010999	Retroviral matrix protein	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR012344	Matrix protein, lentiviral and alpha-retroviral, N-terminal	Homologous Superfamily
A, B, C, D [auth F], E [auth D], A, B, C, D [auth F], E [auth D], F [auth H], G [auth I], H [auth E], I [auth G], J, K, L, M [auth O], N [auth M], O [auth Q], P [auth R], Q [auth N], R [auth P]	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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6T61

A model of the EIAV CA-SP hexamer (C2) from Gag-deltaMA tubes assembled at pH8

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage