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6SX1
Structure of Rib Standard, a Rib domain from Lactobacillus acidophilus
External Resource: Annotation
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
PF08428
e6sx1A1
A: beta sandwiches
X: A putative surface protein (From Topology)
H: A putative surface protein (From Topology)
T: A putative surface protein
F: PF08428
ECOD (1.6)
Protein Family Annotation
Pfam Database Homepage
Chains
Accession
Name
Description
Comments
Source
A
PF08428
Rib domain (Rib)
Rib domain
The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib (Swiss:P72362) and alpha (Swiss:Q02192). These are expressed by group B streptococci, and Rib is thought to confer protective immunity.
Domain
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Surface protein
cation binding
ion binding
binding
calcium ion binding
metal ion binding
small molecule binding
-
cell periphery
plasma membrane
membrane
cellular anatomical entity
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR015919
Cadherin-like superfamily
Homologous Superfamily
A
IPR046776
Putative pectate lyase-like adhesive domain
Repeat
A
IPR013783
Immunoglobulin-like fold
Homologous Superfamily
A
IPR044055
Long Rib domain
Domain
A
IPR012706
Rib/alpha/Esp surface antigen repeat
Repeat
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