Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF07980,PF14322e6smqA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF07980,PF14322ECOD (1.6)
DPF07980,PF14322e6smqD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF07980,PF14322ECOD (1.6)
BPF00593e6smqB1 A: beta barrelsX: Outer membrane meander beta-barrelsH: PorinsT: Ligand-gated protein channelF: PF00593ECOD (1.6)
BPF07715e6smqB2 A: a+b complex topologyX: N0 domain in phage tail proteins and secretins-likeH: TonB-dependent receptor plug domain (From Topology)T: TonB-dependent receptor plug domainF: PF07715ECOD (1.6)
EPF00593e6smqE1 A: beta barrelsX: Outer membrane meander beta-barrelsH: PorinsT: Ligand-gated protein channelF: PF00593ECOD (1.6)
EPF07715e6smqE2 A: a+b complex topologyX: N0 domain in phage tail proteins and secretins-likeH: TonB-dependent receptor plug domain (From Topology)T: TonB-dependent receptor plug domainF: PF07715ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D
PF07980SusD family (SusD_RagB)SusD family- Repeat
A, D
PF14322Starch-binding associating with outer membrane (SusD-like_3)Starch-binding associating with outer membrane- Repeat
PF00593TonB dependent receptor (TonB_dep_Rec)TonB dependent receptor- Family
PF07715TonB-dependent Receptor Plug Domain (Plug)TonB-dependent Receptor Plug DomainThe Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens ...The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Domain
PF13715CarboxypepD_reg-like domain (CarbopepD_reg_2)CarboxypepD_reg-like domainThis domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with Pfam:PF07715 and Pfam:PF00593.Domain
PF00593TonB dependent receptor (TonB_dep_Rec)TonB dependent receptor- Family
PF07715TonB-dependent Receptor Plug Domain (Plug)TonB-dependent Receptor Plug DomainThe Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens ...The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Domain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage