6SJ5 | pdb_00006sj5

Crystal structure of the uL14-RsfS complex from Staphylococcus aureus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6sj5a_	Alpha and beta proteins (a+b)	Nucleotidyltransferase	Nucleotidyltransferase	Iojap/YbeB-like	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d6sj5b_	Alpha and beta proteins (a+b)	Nucleotidyltransferase	Nucleotidyltransferase	Iojap/YbeB-like	automated matches	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	Ribosomal protein L14	8093891	4001826	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	50S Ribosomal protein L14-like	8093892	3000433	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	50S Ribosomal protein L14-like	8093892	3000433	SCOP2B (2022-06-29)
A	SCOP2 Family	Iojap/YbeB-like	8094846	4001878	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleotidyltransferase-like	8094847	3000129	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Nucleotidyltransferase-like	8094847	3000129	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ribosomal_L41	e6sj5D1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Ribosomal_L41	ECOD (v294.1)
C	Ribosomal_L4	e6sj5C1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Ribosomal_L4	ECOD (v294.1)
A	Ribosomal_L4	e6sj5A1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Ribosomal_L4	ECOD (v294.1)
B	Ribosomal_L41	e6sj5B1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Ribosomal_L41	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.40.150.20	Mainly Beta	Beta Barrel	Ribosomal Protein L14	Ribosomal protein L14/L23	CATH (utative)
C	2.40.150.20	Mainly Beta	Beta Barrel	Ribosomal Protein L14	Ribosomal protein L14/L23	CATH (utative)
A	3.30.460.10	Alpha Beta	2-Layer Sandwich	Beta Polymerase	domain 2	CATH (utative)
B	3.30.460.10	Alpha Beta	2-Layer Sandwich	Beta Polymerase	domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	50S ribosomal protein L14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
A, B	Ribosomal silencing factor RsfS	ribonucleoprotein complex binding protein-containing complex binding binding ribosomal large subunit binding ribosome binding	regulation of biological process ribonucleoprotein complex biogenesis regulation of cellular process biological regulation negative regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis cellular component biogenesis ribosome biogenesis negative regulation of cellular process negative regulation of ribosome biogenesis cellular process cellular component organization or biogenesis protein biosynthetic process regulation of biological process ribonucleoprotein complex biogenesis regulation of cellular process biological regulation negative regulation of biological process regulation of ribosome biogenesis regulation of cellular component biogenesis cellular component biogenesis ribosome biogenesis negative regulation of cellular process negative regulation of ribosome biogenesis cellular process cellular component organization or biogenesis protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process organelle assembly membraneless organelle assembly cellular component organization organelle organization cellular component assembly cytosolic ribosome assembly ribosome assembly	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
C, D	IPR000218	Large ribosomal subunit protein uL14	Family
C, D	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
C, D	IPR005745	Large ribosomal subunit protein uL14, bacteria	Family
A, B	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
A, B	IPR004394	Protein Iojap/ribosomal silencing factor RsfS	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.