6S7O | pdb_00006s7o

Cryo-EM structure of human oligosaccharyltransferase complex OST-A


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASTT3e6s7oA2 A: alpha bundlesX: STT3/PglB/AglB transmembrane domain (From Topology)H: STT3/PglB/AglB transmembrane domain (From Topology)T: STT3/PglB/AglB transmembrane domainF: STT3ECOD (1.6)
Aarchaeo_STT3_1ste6s7oA1 A: a/b three-layered sandwichesX: STT3/PglB/AglB core domain (From Topology)H: STT3/PglB/AglB core domain (From Topology)T: STT3/PglB/AglB core domainF: archaeo_STT3_1stECOD (1.6)
BOst4e6s7oB1 A: extended segmentsX: Oligosaccharyltransferase subunit ost4p (From Topology)H: Oligosaccharyltransferase subunit ost4p (From Topology)T: Oligosaccharyltransferase subunit ost4pF: Ost4ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02516Oligosaccharyl transferase STT3, N-terminal (STT3)Oligosaccharyl transferase STT3, N-terminalThis entry consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity [2]. In eukaryotes, OTase transfers a l ...This entry consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity [2]. In eukaryotes, OTase transfers a lipid-linked core-oligosaccharide to selected asparagine residues in the ER [2]. In the archaea STT3 occurs alone, rather than in an OTase complex, and is required for N-glycosylation of asparagines [3-4]. This entry represents the N-terminal domain, consisting of transmembrane helices.
Domain
PF10215Oligosaccaryltransferase (Ost4)Oligosaccaryltransferase- Family
PF05251Oligosaccharyltransferase subunit 5 (Ost5)Oligosaccharyltransferase subunit 5- Family
PF25147Ribophorin_II, C-terminal domain (Ribophorin_II_C)Ribophorin_II, C-terminal domainThis domain is found at the C-terminal of human Ribophorin II, a subunit of the oligosaccharyl transferase (OST) complex that catalyses the first step in protein N-glycosylation. This domain shows an all-alpha configuration and is often found associa ...This domain is found at the C-terminal of human Ribophorin II, a subunit of the oligosaccharyl transferase (OST) complex that catalyses the first step in protein N-glycosylation. This domain shows an all-alpha configuration and is often found associated to Pfam:PF05817, Pfam:PF23861 and Pfam:PF23860.
Domain
PF23860Ribophorin II third domain (Ribophorin_II_3rd)Ribophorin II third domainThis entry represents the third domain of eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed ...This entry represents the third domain of eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of the following proteins: ribophorins I and II (RI and RII), OST48, and Dadl, N33/IAP, OST4, STT3. The family also includes the SWP1 protein from yeast. In yeast the oligosaccharyltransferase complex is composed 7 or 8 subunits, SWP1, being one of them [2][3].
Domain
PF23358OST48 middle domain (OST48_MD)OST48 middle domainThis entry represents the middle domain (MD) of OST48 from animals and its orthologue from yeast Wbp1 [1,2]. OST48/Wbp1 is a subunit of the oligosaccharyl transferase (OST) complex that catalyses the initial transfer of a defined glycan (Glc3Man9GlcN ...This entry represents the middle domain (MD) of OST48 from animals and its orthologue from yeast Wbp1 [1,2]. OST48/Wbp1 is a subunit of the oligosaccharyl transferase (OST) complex that catalyses the initial transfer of a defined glycan (Glc3Man9GlcNAc2 in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation [1,2]. This domain adopts a beta-sandwich fold, which together with the N-terminal domain (Pfam:PF03345), interacts with riphophorin II/Swp1 subunit [3].
Domain
PF03345OST48, N-terminal domain (OST48_N)OST48, N-terminal domainMembers of this entry are involved in asparagine-linked protein glycosylation. In particular, dolichyl-diphosphooligosaccharide-protein glycosyltransferase (DDOST), also known as oligosaccharyltransferase, transfers the high-mannose sugar GlcNAc(2)-M ...Members of this entry are involved in asparagine-linked protein glycosylation. In particular, dolichyl-diphosphooligosaccharide-protein glycosyltransferase (DDOST), also known as oligosaccharyltransferase, transfers the high-mannose sugar GlcNAc(2)-Man(9)-Glc(3) from a dolichol-linked donor to an asparagine acceptor in a consensus Asn-X-Ser/Thr motif. In most eukaryotes, the DDOST complex is composed of three subunits, which in humans are described as a 48kD subunit, ribophorin I, and ribophorin II. However, the yeast DDOST appears to consist of six subunits (alpha, beta, gamma, delta, epsilon, zeta). The yeast beta subunit is a 45kD polypeptide, previously discovered as the Wbp1 protein, with known sequence similarity to the human 48kD subunit and the other orthologues. This is the N-terminal domain of OST48 subunits from animals and plants and the orthologue from yeast Wbp1. This domain is distantly related to the IFT52 N-terminal domain (Pfam:PF23355).
Domain
PF04597Ribophorin I (Ribophorin_I)Ribophorin I- Family
PF02109DAD family (DAD)DAD family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-
Transmembrane protein 258
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit
Oligosaccharyltransferase complex subunit OSTC
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP46977
PharosP0C6T2
PharosP61165
PharosP04844
PharosP39656
PharosQ9NRP0
PharosP04843
PharosP61803

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicGlycosyl transferase GT-C superfamilyOligosaccharyltransferase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage