6S6L
Cryo-EM structure of murine norovirus (MNV-1)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6s6la_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
B | d6s6lb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
C | d6s6lc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Murine norovirus 1 ) [TaxId: 223997 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08435 | e6s6lA2 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: PF08435 | ECOD (1.6) |
A | PF00915 | e6s6lA3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00915 | ECOD (1.6) |
B | PF08435 | e6s6lB3 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: PF08435 | ECOD (1.6) |
B | PF00915 | e6s6lB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00915 | ECOD (1.6) |
C | PF08435 | e6s6lC2 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: PF08435 | ECOD (1.6) |
C | PF00915 | e6s6lC3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00915 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00915 | Calicivirus coat protein (Calici_coat) | Calicivirus coat protein | - | Family | |
PF08435 | Calicivirus coat protein C-terminal (Calici_coat_C) | Calicivirus coat protein C-terminal | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
IPR004005 | Calicivirus coat protein | Domain | |
IPR013643 | Calicivirus coat protein C-terminal | Domain | |
IPR033703 | Picornavirus/Calicivirus coat protein | Domain |