6RLP | pdb_00006rlp

Cryo-EM reconstruction of TMV coat protein

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Y [auth M]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
W [auth L]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
UA [auth Y]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
U [auth K]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
SA [auth X]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
S [auth J]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
QA [auth W]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
Q [auth I]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
OA [auth V]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
O [auth H]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
MA [auth U]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
KA [auth T]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
K [auth F]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
IA [auth S]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
I [auth E]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
GA [auth Q]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
G [auth D]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
EA [auth P]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
CA [auth O]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
AA [auth N]SCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTMV-like viral coat proteins 8036917 3001587 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Y [auth M]TMV_coate6rlpM1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
W [auth L]TMV_coate6rlpL1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
UA [auth Y]TMV_coate6rlpY1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
U [auth K]TMV_coate6rlpK1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
SA [auth X]TMV_coate6rlpX1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
S [auth J]TMV_coate6rlpJ1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
QA [auth W]TMV_coate6rlpW1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
Q [auth I]TMV_coate6rlpI1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
OA [auth V]TMV_coate6rlpV1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
O [auth H]TMV_coate6rlpH1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
MA [auth U]TMV_coate6rlpU1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
M [auth G]TMV_coate6rlpG1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
KA [auth T]TMV_coate6rlpT1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
K [auth F]TMV_coate6rlpF1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
IA [auth S]TMV_coate6rlpS1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
I [auth E]TMV_coate6rlpE1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
GA [auth Q]TMV_coate6rlpQ1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
G [auth D]TMV_coate6rlpD1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
EA [auth P]TMV_coate6rlpP1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
E [auth C]TMV_coate6rlpC1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
CA [auth O]TMV_coate6rlpO1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
C [auth B]TMV_coate6rlpB1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
AA [auth N]TMV_coate6rlpN1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)
ATMV_coate6rlpA1 A: alpha bundlesX: Four-helical up-and-down bundleH: TMV-like viral coat proteins (From Topology)T: TMV-like viral coat proteinsF: TMV_coatECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00721Virus coat protein (TMV like) (TMV_coat)Virus coat protein (TMV like)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
RNA (5'-R(P*GP*AP*A)-3')---
Capsid protein -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001337Tobacco mosaic virus-like, coat proteinFamily
IPR036417Tobacco mosaic virus-like, coat protein superfamilyHomologous Superfamily