Cryo-EM reconstruction of TMV coat protein
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Y [auth M] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| W [auth L] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| UA [auth Y] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| U [auth K] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| SA [auth X] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| S [auth J] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| QA [auth W] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| Q [auth I] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| OA [auth V] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| O [auth H] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| MA [auth U] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| M [auth G] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| KA [auth T] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| K [auth F] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| IA [auth S] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| I [auth E] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| GA [auth Q] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| G [auth D] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| EA [auth P] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| E [auth C] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| CA [auth O] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| C [auth B] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| AA [auth N] | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | TMV-like viral coat proteins | 8036917 | 3001587 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| Y [auth M] | PF29847 | e6rlpM1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| W [auth L] | PF29847 | e6rlpL1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| UA [auth Y] | PF29847 | e6rlpY1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| U [auth K] | PF29847 | e6rlpK1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| SA [auth X] | PF29847 | e6rlpX1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| S [auth J] | PF29847 | e6rlpJ1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| QA [auth W] | PF29847 | e6rlpW1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| Q [auth I] | PF29847 | e6rlpI1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| OA [auth V] | PF29847 | e6rlpV1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| O [auth H] | PF29847 | e6rlpH1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| MA [auth U] | PF29847 | e6rlpU1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| M [auth G] | PF29847 | e6rlpG1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| KA [auth T] | PF29847 | e6rlpT1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| K [auth F] | PF29847 | e6rlpF1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| IA [auth S] | PF29847 | e6rlpS1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| I [auth E] | PF29847 | e6rlpE1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| GA [auth Q] | PF29847 | e6rlpQ1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| G [auth D] | PF29847 | e6rlpD1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| EA [auth P] | PF29847 | e6rlpP1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| E [auth C] | PF29847 | e6rlpC1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| CA [auth O] | PF29847 | e6rlpO1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| C [auth B] | PF29847 | e6rlpB1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| AA [auth N] | PF29847 | e6rlpN1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
| A | PF29847 | e6rlpA1 | A: alpha bundles | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: PF29847 | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00721 | Virus coat protein (TMV like) (TMV_coat) | Virus coat protein (TMV like) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| RNA (5'-R(P*GP*AP*A)-3') | - | - | - | |
| Capsid protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001337 | Tobacco mosaic virus-like, coat protein | Family | |
| IPR036417 | Tobacco mosaic virus-like, coat protein superfamily | Homologous Superfamily |














