6R8N | pdb_00006r8n

STRUCTURE DETERMINATION OF THE TETRAHEDRAL AMINOPEPTIDASE TET2 FROM P. HORIKOSHII BY USE OF COMBINED SOLID-STATE NMR, SOLUTION-STATE NMR AND EM DATA 4.1 A, FOLLOWED BY REAL_SPACE_REFINEMENT AT 4.1 A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Zn-dependent exopeptidases	8043878	3000662	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aminopeptidase/glucanase lid domain	8043877	3001917	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Peptidase_M42	e6r8nL2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
L	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nL1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
K	Peptidase_M42	e6r8nK2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
K	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nK1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
J	Peptidase_M42	e6r8nJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
J	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nJ2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
I	Peptidase_M42	e6r8nI2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
I	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nI1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
H	Peptidase_M42	e6r8nH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
H	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nH2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
G	Peptidase_M42	e6r8nG2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
G	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nG1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
F	Peptidase_M42	e6r8nF2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
F	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nF1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
E	Peptidase_M42	e6r8nE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
E	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nE2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
D	Peptidase_M42	e6r8nD2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
D	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nD1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
C	Peptidase_M42	e6r8nC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
C	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nC2	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
B	Peptidase_M42	e6r8nB2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
B	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nB1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)
A	Peptidase_M42	e6r8nA2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Peptidase_M42	ECOD (1.6)
A	Peptidase_M18_1st,Peptidase_M20_1st	e6r8nA1	A: a/b three-layered sandwiches	X: Phosphorylase/hydrolase-like	H: Zn-dependent exopeptidases (From Topology)	T: Zn-dependent exopeptidases	F: Peptidase_M18_1st,Peptidase_M20_1st	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF05343	M42 glutamyl aminopeptidase (Peptidase_M42)	M42 glutamyl aminopeptidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Tetrahedral aminopeptidase	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding aminopeptidase activity exopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023367	Peptidase M42, domain 2	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR051464	Peptidase M42 aminopeptidase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008007	Peptidase M42	Family