6R88 | pdb_00006r88

Structure of Arabidopsis thaliana GLR3.3 ligand-binding domain in complex with glycine

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd6r88d_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)
Cd6r88c_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)
Bd6r88b_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)
Ad6r88a_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DMG4e6r88D2 A: a/b three-layered sandwichesX: P-loop domains-likeH: Helical bundle in flu nucleocapsid proteinT: Helical bundle in flu nucleocapsid proteinF: MG4ECOD (v294.1)
CMG4e6r88C1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Helical bundle in flu nucleocapsid proteinT: Helical bundle in flu nucleocapsid proteinF: MG4ECOD (v294.1)
BMG4e6r88B1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Helical bundle in flu nucleocapsid proteinT: Helical bundle in flu nucleocapsid proteinF: MG4ECOD (v294.1)
AMG4e6r88A1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Helical bundle in flu nucleocapsid proteinT: Helical bundle in flu nucleocapsid proteinF: MG4ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, B, C, D
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Glutamate receptor 3.3,Glutamate receptor 3.3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR017103Ionotropic glutamate receptor, plantFamily
A, B, C, D
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, B, C, D
IPR044440Plant glutamate receptor, periplasmic ligand-binding domainDomain
A, B, C, D
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, B, C, D
IPR015683Ionotropic glutamate receptorFamily
A, B, C, D
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, B, C, D
IPR001828Receptor, ligand binding regionDomain