6R1B | pdb_00006r1b

Crystal structure of UgpB from Mycobacterium tuberculosis in complex with glycerophosphocholine

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Proteasome	e6r1bB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Ntn	T: Proteasome subunits	F: Proteasome	ECOD (v294.1)
D	Metallophos	e6r1bD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
C	Metallophos	e6r1bC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
A	Metallophos	e6r1bA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)
D	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)
C	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)
A	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
D	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
C	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family
A	PF01547	Bacterial extracellular solute-binding protein (SBP_bac_1)	Bacterial extracellular solute-binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane
D	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane
C	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane
A	Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB	cation binding ion binding binding metal ion binding small molecule binding transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR050490	Bacterial solute-binding protein 1	Family
B	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
B	IPR006059	Bacterial-type extracellular solute-binding protein	Family
D	IPR050490	Bacterial solute-binding protein 1	Family
D	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
D	IPR006059	Bacterial-type extracellular solute-binding protein	Family
C	IPR050490	Bacterial solute-binding protein 1	Family
C	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
C	IPR006059	Bacterial-type extracellular solute-binding protein	Family
A	IPR050490	Bacterial solute-binding protein 1	Family
A	IPR006311	Twin-arginine translocation pathway, signal sequence	Conserved Site
A	IPR006059	Bacterial-type extracellular solute-binding protein	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	MLZ	Parent Component: LYS RESID: AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085
D	MLZ	Parent Component: LYS RESID: AA0076 , AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
C	MLZ	Parent Component: LYS RESID: AA0076 , AA0076 , AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
A	MLZ	Parent Component: LYS RESID: AA0076 , AA0076 , AA0076 , AA0076 PSI-MOD : N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.