6QNZ | pdb_00006qnz

Crystal structure of the site-specific DNA nickase N.BspD6I E418A Mutant


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8053985 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRestriction endonuclease-like 8053982 3000104 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8053984 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8053985 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8053984 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRestriction endonuclease-like 8053982 3000104 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARE_AlwI_1ste6qnzA3 A: alpha arraysX: HTHH: HTHT: wingedF: RE_AlwI_1stECOD (1.6)
ARE_AlwI_likee6qnzA1 A: alpha arraysX: HTHH: HTHT: wingedF: RE_AlwI_likeECOD (1.6)
AEUF08145e6qnzA4 A: alpha bundlesX: immunoglobulin/albumin-binding domain-likeH: Helical linker domain in nicking endonuclease N.BspD6I (From Topology)T: Helical linker domain in nicking endonuclease N.BspD6IF: EUF08145ECOD (1.6)
ARE_AlwI_2nde6qnzA2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: RE_AlwI_2ndECOD (1.6)
BRE_AlwI_1ste6qnzB4 A: alpha arraysX: HTHH: HTHT: wingedF: RE_AlwI_1stECOD (1.6)
BRE_AlwI_likee6qnzB2 A: alpha arraysX: HTHH: HTHT: wingedF: RE_AlwI_likeECOD (1.6)
BEUF08145e6qnzB3 A: alpha bundlesX: immunoglobulin/albumin-binding domain-likeH: Helical linker domain in nicking endonuclease N.BspD6I (From Topology)T: Helical linker domain in nicking endonuclease N.BspD6IF: EUF08145ECOD (1.6)
BRE_AlwI_2nde6qnzB1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: RE_AlwI_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1270.310 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak Chain:ACATH (utative)
A3.40.91.50 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease CATH (utative)
B1.20.1270.310 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak Chain:ACATH (utative)
B3.40.91.50 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Heterodimeric restriction endonuclease R.BspD6I large subunit - -

InterPro: Protein Family Classification InterPro Database Homepage