6Q8Y

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth AQ]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
TA [auth BI]SCOP2B SuperfamilyTranslational machinery components8052875 3000571 SCOP2B (2022-06-29)
ZA [auth BO]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
ZA [auth BO]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
IB [auth E]SCOP2B SuperfamilyRibosomal protein S198086076 3000686 SCOP2B (2022-06-29)
JB [auth F]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
SB [auth P]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8061280 3001397 SCOP2B (2022-06-29)
VB [auth S]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
VB [auth S]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
VB [auth S]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
J [auth AI]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
K [auth AJ]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
L [auth AK]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
M [auth AL]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
O [auth AN]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
S [auth AR]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077127 3001045 SCOP2B (2022-06-29)
B [auth AA]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
U [auth AT]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
V [auth AU]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
W [auth AV]SCOP2B SuperfamilyRibosomal protein L29e8053045 3002157 SCOP2B (2022-06-29)
Y [auth AX]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
Z [auth a]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053136 3000068 SCOP2B (2022-06-29)
AA [auth b]SCOP2B SuperfamilyRibosomal protein S88096922 3000709 SCOP2B (2022-06-29)
C [auth AB]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
DA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053149 3000068 SCOP2B (2022-06-29)
FA [auth g]SCOP2B SuperfamilyRibosomal protein S30e-like8053451 3002190 SCOP2B (2022-06-29)
KA [auth AY]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
LA [auth BA]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
MA [auth BB]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
D [auth AC]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
OA [auth BD]SCOP2B SuperfamilyRibosomal protein L16p/L10e8079407 3000884 SCOP2B (2022-06-29)
PA [auth BE]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
PA [auth BE]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
QA [auth BF]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
VA [auth BK]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
WA [auth BL]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
XA [auth BM]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
YA [auth BN]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
FB [auth B]SCOP2B SuperfamilyRibosomal protein S78065999 3000799 SCOP2B (2022-06-29)
GB [auth C]SCOP2B SuperfamilyWinged helix DNA-binding domain8055713 3000034 SCOP2B (2022-06-29)
HB [auth D]SCOP2B SuperfamilyL30e-like8096946 3001739 SCOP2B (2022-06-29)
LB [auth H]SCOP2B SuperfamilyS13-like H2TH domain8098450 3000053 SCOP2B (2022-06-29)
MB [auth J]SCOP2B SuperfamilyRibosomal protein S108098648 3001336 SCOP2B (2022-06-29)
NB [auth K]SCOP2B SuperfamilyWinged helix DNA-binding domain8059235 3000034 SCOP2B (2022-06-29)
OB [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins8063430 3000135 SCOP2B (2022-06-29)
PB [auth M]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052569 3000068 SCOP2B (2022-06-29)
G [auth AF]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
TB [auth Q]SCOP2B SuperfamilyRibosomal S3Ae-like8053211 3002166 SCOP2B (2022-06-29)
WB [auth T]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
YB [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8053083 3000433 SCOP2B (2022-06-29)
AC [auth X]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
AC [auth X]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
H [auth AG]SCOP2B SuperfamilyRL5-like8099392 3001709 SCOP2B (2022-06-29)
BC [auth Y]SCOP2B SuperfamilyHomeodomain-like8052973 3000001 SCOP2B (2022-06-29)
BC [auth Y]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052974 3001284 SCOP2B (2022-06-29)
CC [auth Z]SCOP2B SuperfamilyTranslational machinery components8098660 3000571 SCOP2B (2022-06-29)
I [auth AH]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth AM]Ribosomal_L14ee6q8yAM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
P [auth AO]Ribosomal_L40ee6q8yAO1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
R [auth AQ]Ribosomal_L15ee6q8yAQ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
TA [auth BI]Ribosomal_L5ee6q8yBI1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
ZA [auth BO]Ribosomal_L30_1e6q8yBO1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
IB [auth E]Ribosomal_S19e6q8yE1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
JB [auth F]Ribosomal_S9e6q8yF1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
KB [auth G]Ribosomal_S17ee6q8yG1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
SB [auth P]Ribosomal_S2_2e6q8yP1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
VB [auth S]Ribosomal_S4ee6q8yS3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
VB [auth S]40S_S4_Ce6q8yS1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
VB [auth S]RS4NTe6q8yS2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
XB [auth U]Ribosomal_S7e_Ne6q8yU2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
XB [auth U]Ribosomal_S7e_C_2e6q8yU1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_2ECOD (1.6)
J [auth AI]Ribosomal_L38ee6q8yAI1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
K [auth AJ]Ribosomal_L13ee6q8yAJ1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
L [auth AK]Ribosomal_L26e6q8yAK1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
M [auth AL]Ribosomal_L39e6q8yAL1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
O [auth AN]Ribosomal_L27ee6q8yAN1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
Q [auth AP]Ribosomal_L44e6q8yAP1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
S [auth AR]Ribosomal_L18e6q8yAR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
B [auth AA]Ribosomal_L7Ae_1e6q8yAA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
T [auth AS]Ribosomal_L41e6q8yAS1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
U [auth AT]Ribosomal_L37aee6q8yAT1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
V [auth AU]Ribosomal_L13e6q8yAU1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
W [auth AV]Ribosomal_L29ee6q8yAV1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
X [auth AW]Ribosomal_L2_1e6q8yAW2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
X [auth AW]Ribosomal_L2_C_2e6q8yAW1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
Y [auth AX]Ribosomal_L22e6q8yAX1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
Z [auth a]Ribosomal_S21ee6q8ya1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
AA [auth b]Ribosomal_S8_N_1e6q8yb2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
AA [auth b]Ribosomal_S8_C_1e6q8yb1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
BA [auth c]Ribosom_S12_S23e6q8yc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
CA [auth d]Ribosomal_S24ee6q8yd1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
C [auth AB]Ribosomal_L14e6q8yAB1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
DA [auth e]Ribosomal_S26ee6q8ye1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
EA [auth f]Ribosomal_S27ee6q8yf1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
FA [auth g]Ribosomal_S30e6q8yg1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
KA [auth AY]Ribosomal_L7Aee6q8yAY1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
LA [auth BA]Ribosomal_L3e6q8yBA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
MA [auth BB]Ribosomal_L18e6q8yBB1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
D [auth AC]Ribosomal_L36ee6q8yAC1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
NA [auth BC]Ribosomal_L31ee6q8yBC1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
OA [auth BD]Ribosomal_L16e6q8yBD1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
PA [auth BE]Ribosomal_L4e6q8yBE3 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
PA [auth BE]Ribos_L4_asso_Ce6q8yBE2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
QA [auth BF]Ribosomal_L19e_Ne6q8yBF2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
QA [auth BF]Ribosomal_L19e_Ce6q8yBF1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
RA [auth BG]Ribosomal_L32ee6q8yBG1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
SA [auth BH]Ribosomal_L18Ae6q8yBH1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
UA [auth BJ]Ribosomal_L21ee6q8yBJ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
VA [auth BK]Ribosomal_L35Aee6q8yBK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
WA [auth BL]Ribosomal_L22ee6q8yBL1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
E [auth AD]Ribosomal_L6_2e6q8yAD2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
E [auth AD]Ribosomal_L6e6q8yAD1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
XA [auth BM]Ribosomal_L6ee6q8yBM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
YA [auth BN]Ribosomal_L34ee6q8yBN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
AB [auth BP]Ribosomal_L29_2e6q8yBP1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
EB [auth A]Ribosomal_S3_Ce6q8yA2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
EB [auth A]KH_2_3e6q8yA1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
FB [auth B]Ribosomal_S7_1e6q8yB1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
GB [auth C]S10_plectine6q8yC1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
F [auth AE]Ribosomal_L24ee6q8yAE1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
HB [auth D]Ribosomal_L7Aee6q8yD1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
LB [auth H]Ribosomal_S13e6q8yH1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
MB [auth J]Ribosomal_S10_1e6q8yJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
NB [auth K]Ribosomal_S25e6q8yK1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
OB [auth L]Ribosomal_S28ee6q8yL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
PB [auth M]Ribosomal_S14_2e6q8yM1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
QB [auth N]Ribosomal_S27e6q8yN1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
G [auth AF]Ribosomal_L37ee6q8yAF1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
RB [auth O]ANAPC4_WD40_2e6q8yO1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
TB [auth Q]Ribosomal_S3Ae_Ne6q8yQ1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
TB [auth Q]Ribosomal_S3Ae_Ce6q8yQ2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
UB [auth R]Ribosomal_S5_C_1e6q8yR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
UB [auth R]Ribosomal_S5_3e6q8yR2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
UB [auth R]Ribosomal_S5_2e6q8yR3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
WB [auth T]Ribosomal_S6ee6q8yT1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
YB [auth V]Ribosomal_S8ee6q8yV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
ZB [auth W]S4e6q8yW1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
AC [auth X]Ribosomal_S17_1e6q8yX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
H [auth AG]Ribosomal_L5_Ce6q8yAG1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
BC [auth Y]Ribosomal_S13_Ne6q8yY2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
BC [auth Y]Ribosomal_S15_2e6q8yY1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
CC [auth Z]Ribosomal_S11e6q8yZ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
DC [auth I]Ribosomal_S19ee6q8yI1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
I [auth AH]Ribosomal_L23_3e6q8yAH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth AM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
N [auth AM]PF00467KOW motif (KOW)KOW motif- Family
P [auth AO]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
R [auth AQ]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
TA [auth BI]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
TA [auth BI]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
ZA [auth BO]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
ZA [auth BO]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
IB [auth E]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
JB [auth F]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
KB [auth G]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
SB [auth P]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
VB [auth S]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
VB [auth S]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
VB [auth S]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
VB [auth S]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
VB [auth S]PF00467KOW motif (KOW)KOW motif- Family
XB [auth U]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
J [auth AI]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
K [auth AJ]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
L [auth AK]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
L [auth AK]PF00467KOW motif (KOW)KOW motif- Family
M [auth AL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
O [auth AN]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
Q [auth AP]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
S [auth AR]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
B [auth AA]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
T [auth AS]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
U [auth AT]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
V [auth AU]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
W [auth AV]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
X [auth AW]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
X [auth AW]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
Y [auth AX]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Z [auth a]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
AA [auth b]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
BA [auth c]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
CA [auth d]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
C [auth AB]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
DA [auth e]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
EA [auth f]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
FA [auth g]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
GA [auth z]PF18334Exoribonuclease Xrn1 D2/D3 domain (XRN1_D2_D3)Exoribonuclease Xrn1 D2/D3 domainThis domain can be found in 5' to 3' exoribonuclease 1 (XRN1) which belong to a family of conserved enzymes in eukaryotes and have important functions in transcription, RNA metabolism, and RNA interference. Xrn1 in fungi and animals is primarily cyto ...This domain can be found in 5' to 3' exoribonuclease 1 (XRN1) which belong to a family of conserved enzymes in eukaryotes and have important functions in transcription, RNA metabolism, and RNA interference. Xrn1 in fungi and animals is primarily cytosolic, involved in degradation of decapped mRNAs, nonsense mediated decay, microRNA decay and is essential for proper development. The Xrn1 homolog in Drosophila, known as Pacman, is required for male fertility [1]. This entry relates to domain 2 and 3 combined which can be found in the 510-residue C-terminal extension found in XRN1 and not in XRN2/Rat1. Domain D2 is formed by two stretches of Xrn1, residues 915-960 and 1134-1151. The presence of domain (D3) is suggested based on structure. This domain is formed by residues 979-1109, in the insert of domain D2. It is suggested that domains D2-D4 may help maintain domain D1 Pfam:PF18332 in the correct conformation, thereby indirectly stabilising the conformation of the N-terminal segment Pfam:PF03159 [1].
Domain
GA [auth z]PF18332Exoribonuclease Xrn1 D1 domain (XRN1_D1)Exoribonuclease Xrn1 D1 domainThis domain can be found in 5' to 3' exoribonuclease 1 (XRN1) which belong to a family of conserved enzymes in eukaryotes and have important functions in transcription, RNA metabolism, and RNA interference. Xrn1 in fungi and animals is primarily cyto ...This domain can be found in 5' to 3' exoribonuclease 1 (XRN1) which belong to a family of conserved enzymes in eukaryotes and have important functions in transcription, RNA metabolism, and RNA interference. Xrn1 in fungi and animals is primarily cytosolic and is involved in degradation of decapped mRNAs, nonsense mediated decay, microRNA decay and is essential for proper development. The Xrn1 homolog in Drosophila, known as Pacman, is required for male fertility [1]. This domain (D1) along with 3 other domains, make up a 510-residue segment following the conserved regions found in XRNs but they are only present in XRN1 and are absent in Rat1/XRN2. The amino acid sequences of these four domains contain an excess of basic residues, suggesting that these domains might help in binding the RNA substrate. Mutational studies carried out in D1 domain show that the mutant forms had dramatically reduced nuclease activity towards ssDNA substrate indicating that domain D1 is required for Xrn1 nuclease activity [1].
Domain
GA [auth z]PF17846Xrn1 helical domain (XRN_M)Xrn1 helical domainThis helical domain is part of the Xrn1 catalytic core [1]. Xrn1 is a cytoplasmic 5'-3' exonuclease that degrades decapped mRNAs.Domain
GA [auth z]PF03159XRN 5'-3' exonuclease N-terminus (XRN_N)XRN 5'-3' exonuclease N-terminus- Family
KA [auth AY]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LA [auth BA]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
MA [auth BB]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
D [auth AC]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
NA [auth BC]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
OA [auth BD]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PA [auth BE]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PA [auth BE]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
QA [auth BF]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
RA [auth BG]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
SA [auth BH]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
UA [auth BJ]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
VA [auth BK]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
WA [auth BL]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
E [auth AD]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
XA [auth BM]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
YA [auth BN]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
AB [auth BP]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
EB [auth A]PF07650KH domain (KH_2)KH domain- Domain
EB [auth A]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
FB [auth B]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
GB [auth C]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
F [auth AE]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
HB [auth D]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LB [auth H]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
MB [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
NB [auth K]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
OB [auth L]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
PB [auth M]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
QB [auth N]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
G [auth AF]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
RB [auth O]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
TB [auth Q]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
UB [auth R]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
UB [auth R]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
WB [auth T]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
YB [auth V]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
ZB [auth W]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
ZB [auth W]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
AC [auth X]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
AC [auth X]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
H [auth AG]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
H [auth AG]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
BC [auth Y]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
BC [auth Y]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
CC [auth Z]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
DC [auth I]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
I [auth AH]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
I [auth AH]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
N [auth AM]60S ribosomal protein L14-A
P [auth AO]Ubiquitin-60S ribosomal protein L40
R [auth AQ]60S ribosomal protein L15-A
IA [auth n]P-site tRNA---
TA [auth BI]60S ribosomal protein L5
ZA [auth BO]60S ribosomal protein L7-A
DB [auth BS]5.8S ribosomal RNA---
IB [auth E]40S ribosomal protein S15
JB [auth F]40S ribosomal protein S16-A
KB [auth G]40S ribosomal protein S17-A
SB [auth P]40S ribosomal protein S0-A
VB [auth S]40S ribosomal protein S4-A
XB [auth U]40S ribosomal protein S7-A
A [auth 2]18S ribosomal RNA---
J [auth AI]60S ribosomal protein L38
K [auth AJ]60S ribosomal protein L13-A
L [auth AK]60S ribosomal protein L26-A
M [auth AL]60S ribosomal protein L39
O [auth AN]60S ribosomal protein L27-A
Q [auth AP]60S ribosomal protein L42-A
S [auth AR]60S ribosomal protein L28
B [auth AA]60S ribosomal protein L8-A
T [auth AS]60S ribosomal protein L41-B
U [auth AT]60S ribosomal protein L43-A
V [auth AU]60S ribosomal protein L16-A
W [auth AV]60S ribosomal protein L29
X [auth AW]60S ribosomal protein L2-A
Y [auth AX]60S ribosomal protein L17-A
Z [auth a]40S ribosomal protein S21-A
AA [auth b]40S ribosomal protein S22-A
BA [auth c]40S ribosomal protein S23-A
CA [auth d]40S ribosomal protein S24-A
C [auth AB]60S ribosomal protein L23-A
DA [auth e]40S ribosomal protein S26-B
EA [auth f]40S ribosomal protein S27-A
FA [auth g]40S ribosomal protein S30-A
GA [auth z]5'-3' exoribonuclease 1
HA [auth l]mRNA---
JA [auth m]E-site tRNA---
KA [auth AY]60S ribosomal protein L30
LA [auth BA]60S ribosomal protein L3
MA [auth BB]60S ribosomal protein L18-A
D [auth AC]60S ribosomal protein L36-A
NA [auth BC]60S ribosomal protein L31-A
OA [auth BD]60S ribosomal protein L10
PA [auth BE]60S ribosomal protein L4-A
QA [auth BF]60S ribosomal protein L19-A
RA [auth BG]60S ribosomal protein L32
SA [auth BH]60S ribosomal protein L20-A
UA [auth BJ]60S ribosomal protein L21-A
VA [auth BK]60S ribosomal protein L33-A
WA [auth BL]60S ribosomal protein L22-A
E [auth AD]60S ribosomal protein L9-A
XA [auth BM]60S ribosomal protein L6-A
YA [auth BN]60S ribosomal protein L34-A
AB [auth BP]60S ribosomal protein L35-A
BB [auth BQ]25S ribosomal RNA---
CB [auth BR]5S ribosomal RNA---
EB [auth A]40S ribosomal protein S3
FB [auth B]Rps5p
GB [auth C]40S ribosomal protein S10-A
F [auth AE]60S ribosomal protein L24-A
HB [auth D]40S ribosomal protein S12
LB [auth H]40S ribosomal protein S18-A
MB [auth J]40S ribosomal protein S20
NB [auth K]40S ribosomal protein S25-A
OB [auth L]40S ribosomal protein S28-A
PB [auth M]40S ribosomal protein S29-A
QB [auth N]Ubiquitin-40S ribosomal protein S31
G [auth AF]60S ribosomal protein L37-A
RB [auth O]Guanine nucleotide-binding protein subunit beta-like protein
TB [auth Q]40S ribosomal protein S1-A
UB [auth R]40S ribosomal protein S2
WB [auth T]40S ribosomal protein S6-A
YB [auth V]40S ribosomal protein S8-A
ZB [auth W]40S ribosomal protein S9-A
AC [auth X]40S ribosomal protein S11-A
H [auth AG]60S ribosomal protein L11-B
BC [auth Y]40S ribosomal protein S13
CC [auth Z]40S ribosomal protein S14-B
DC [auth I]40S ribosomal protein S19-A
I [auth AH]60S ribosomal protein L25

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
N [auth AM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth AM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth AM]IPR039660Large ribosomal subunit protein eL14Family
N [auth AM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
N [auth AM]IPR002784Large ribosomal subunit protein eL14 domainDomain
N [auth AM]IPR005824KOWDomain
P [auth AO]IPR019954Ubiquitin conserved siteConserved Site
P [auth AO]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
P [auth AO]IPR000626Ubiquitin-like domainDomain
P [auth AO]IPR019956Ubiquitin domainDomain
P [auth AO]IPR001975Large ribosomal subunit protein eL40 domainDomain
P [auth AO]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
R [auth AQ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth AQ]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
R [auth AQ]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
R [auth AQ]IPR000439Large ribosomal subunit protein eL15Family
TA [auth BI]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
TA [auth BI]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
ZA [auth BO]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
ZA [auth BO]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
ZA [auth BO]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
ZA [auth BO]IPR039699Large ribosomal subunit protein uL30Family
ZA [auth BO]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
ZA [auth BO]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
ZA [auth BO]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IB [auth E]IPR002222Small ribosomal subunit protein uS19Family
IB [auth E]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IB [auth E]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
IB [auth E]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
JB [auth F]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
JB [auth F]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
JB [auth F]IPR000754Small ribosomal subunit protein uS9Family
JB [auth F]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
KB [auth G]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
KB [auth G]IPR001210Small ribosomal subunit protein eS17Family
KB [auth G]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
SB [auth P]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
SB [auth P]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
SB [auth P]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
SB [auth P]IPR001865Small ribosomal subunit protein uS2Family
SB [auth P]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
VB [auth S]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
VB [auth S]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
VB [auth S]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
VB [auth S]IPR002942RNA-binding S4 domainDomain
VB [auth S]IPR013845Small ribosomal subunit protein eS4, central regionDomain
VB [auth S]IPR000876Small ribosomal subunit protein eS4Family
VB [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
VB [auth S]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
VB [auth S]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
VB [auth S]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
VB [auth S]IPR005824KOWDomain
XB [auth U]IPR000554Small ribosomal subunit protein eS7Family
XB [auth U]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
J [auth AI]IPR002675Large ribosomal subunit protein eL38Family
J [auth AI]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
K [auth AJ]IPR001380Large ribosomal subunit protein eL13Family
K [auth AJ]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
L [auth AK]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
L [auth AK]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth AK]IPR005824KOWDomain
L [auth AK]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth AK]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
L [auth AK]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
M [auth AL]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
M [auth AL]IPR000077Large ribosomal subunit protein eL39Family
M [auth AL]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
O [auth AN]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
O [auth AN]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
O [auth AN]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth AN]IPR001141Large ribosomal subunit protein eL27Family
O [auth AN]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Q [auth AP]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth AP]IPR000552Large ribosomal subunit protein eL42Family
S [auth AR]IPR021131Large ribosomal subunit protein uL15/eL18Domain
S [auth AR]IPR030878Large ribosomal subunit protein uL15Family
S [auth AR]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
S [auth AR]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
B [auth AA]IPR001921Large ribosomal subunit protein eL8Family
B [auth AA]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
B [auth AA]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
B [auth AA]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
B [auth AA]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
T [auth AS]IPR007836Large ribosomal subunit protein eS32Family
U [auth AT]IPR002674Large ribosomal subunit protein eL43Family
U [auth AT]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
U [auth AT]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
V [auth AU]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
V [auth AU]IPR005822Large ribosomal subunit protein uL13Family
V [auth AU]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
V [auth AU]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
W [auth AV]IPR002673Large ribosomal subunit protein eL29Family
X [auth AW]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
X [auth AW]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth AW]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth AW]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
X [auth AW]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
X [auth AW]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
X [auth AW]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
X [auth AW]IPR002171Large ribosomal subunit protein uL2Family
Y [auth AX]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
Y [auth AX]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Y [auth AX]IPR001063Large ribosomal subunit protein uL22Family
Y [auth AX]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
Z [auth a]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
Z [auth a]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
Z [auth a]IPR001931Small ribosomal subunit protein eS21Family
AA [auth b]IPR000630Small ribosomal subunit protein uS8Family
AA [auth b]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
AA [auth b]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
BA [auth c]IPR006032Small ribosomal subunit protein uS12Family
BA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BA [auth c]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
CA [auth d]IPR001976Small ribosomal subunit protein eS24Family
CA [auth d]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
CA [auth d]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
C [auth AB]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
C [auth AB]IPR000218Large ribosomal subunit protein uL14Family
C [auth AB]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
DA [auth e]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
DA [auth e]IPR000892Small ribosomal subunit protein eS26Family
DA [auth e]IPR047864Ribosomal protein eS26, conserved siteConserved Site
EA [auth f]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
EA [auth f]IPR000592Small ribosomal subunit protein eS27Family
EA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth g]IPR006846Small ribosomal subunit protein eS30Family
GA [auth z]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GA [auth z]IPR0164945'-3' exoribonuclease 1Family
GA [auth z]IPR0409925'-3' exoribonuclease 1, D1 domainDomain
GA [auth z]IPR0470075'-3' exoribonuclease 1, D1 domain superfamilyHomologous Superfamily
GA [auth z]IPR0470085'-3' exoribonuclease 1, SH3-like domain superfamilyHomologous Superfamily
GA [auth z]IPR0270735'-3' exoribonucleaseFamily
GA [auth z]IPR041106Exoribonuclease Xrn1, D2/D3 domainDomain
GA [auth z]IPR0413855'-3' exoribonuclease 1, SH3-like domainDomain
GA [auth z]IPR041412Xrn1, helical domainDomain
GA [auth z]IPR004859Xrn1, N-terminalDomain
KA [auth AY]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
KA [auth AY]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KA [auth AY]IPR039109Large ribosomal subunit protein eL30-likeFamily
KA [auth AY]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
LA [auth BA]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
LA [auth BA]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
LA [auth BA]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
LA [auth BA]IPR000597Large ribosomal subunit protein uL3Family
LA [auth BA]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
MA [auth BB]IPR021131Large ribosomal subunit protein uL15/eL18Domain
MA [auth BB]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
MA [auth BB]IPR000039Large ribosomal subunit protein eL18Family
MA [auth BB]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
D [auth AC]IPR000509Large ribosomal subunit protein eL36Family
D [auth AC]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
NA [auth BC]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
NA [auth BC]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
NA [auth BC]IPR000054Large ribosomal subunit protein eL31Family
OA [auth BD]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
OA [auth BD]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
OA [auth BD]IPR016180Large ribosomal subunit protein uL16 domainDomain
OA [auth BD]IPR047873Large ribosomal subunit protein uL16Family
OA [auth BD]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
PA [auth BE]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
PA [auth BE]IPR002136Large ribosomal subunit protein uL4Family
PA [auth BE]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
PA [auth BE]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
PA [auth BE]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
QA [auth BF]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
QA [auth BF]IPR039547Large ribosomal subunit protein eL19Family
QA [auth BF]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
QA [auth BF]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
QA [auth BF]IPR000196Large ribosomal subunit protein eL19 domainDomain
QA [auth BF]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
RA [auth BG]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
RA [auth BG]IPR001515Large ribosomal subunit protein eL32Family
RA [auth BG]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
SA [auth BH]IPR028877Large ribosomal subunit protein eL20Family
SA [auth BH]IPR023573Large ribosomal subunit protein eL20 domainDomain
SA [auth BH]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
UA [auth BJ]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
UA [auth BJ]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
UA [auth BJ]IPR001147Large ribosomal subunit protein eL21Family
UA [auth BJ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth BK]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
VA [auth BK]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
VA [auth BK]IPR001780Large ribosomal subunit protein eL33Family
VA [auth BK]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
WA [auth BL]IPR002671Large ribosomal subunit protein eL22Family
WA [auth BL]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
E [auth AD]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
E [auth AD]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
E [auth AD]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
E [auth AD]IPR000702Large ribosomal subunit protein uL6-likeFamily
XA [auth BM]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
XA [auth BM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
XA [auth BM]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
XA [auth BM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
XA [auth BM]IPR000915Large ribosomal subunit protein eL6Family
YA [auth BN]IPR008195Large ribosomal subunit protein eL34Family
YA [auth BN]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
AB [auth BP]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
AB [auth BP]IPR001854Large ribosomal subunit protein uL29Family
AB [auth BP]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
AB [auth BP]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
EB [auth A]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
EB [auth A]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
EB [auth A]IPR004044K Homology domain, type 2Domain
EB [auth A]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
EB [auth A]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
EB [auth A]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
EB [auth A]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
FB [auth B]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
FB [auth B]IPR000235Small ribosomal subunit protein uS7Family
FB [auth B]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
FB [auth B]IPR023798Small ribosomal subunit protein uS7 domainDomain
FB [auth B]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
GB [auth C]IPR037447Small ribosomal subunit protein eS10Family
GB [auth C]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
GB [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
GB [auth C]IPR005326Plectin/eS10, N-terminalDomain
F [auth AE]IPR000988Large ribosomal subunit protein eL24-relatedFamily
F [auth AE]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
F [auth AE]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
HB [auth D]IPR000530Small ribosomal subunit protein eS12Family
HB [auth D]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
HB [auth D]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HB [auth D]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
LB [auth H]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
LB [auth H]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
LB [auth H]IPR001892Small ribosomal subunit protein uS13Family
LB [auth H]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
MB [auth J]IPR001848Small ribosomal subunit protein uS10Family
MB [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
MB [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
MB [auth J]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
MB [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
NB [auth K]IPR004977Small ribosomal subunit protein eS25Family
NB [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
OB [auth L]IPR028626Ribosomal protein eS28 conserved siteConserved Site
OB [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OB [auth L]IPR000289Small ribosomal subunit protein eS28Family
PB [auth M]IPR001209Small ribosomal subunit protein uS14Family
PB [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
PB [auth M]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
PB [auth M]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
QB [auth N]IPR019954Ubiquitin conserved siteConserved Site
QB [auth N]IPR000626Ubiquitin-like domainDomain
QB [auth N]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
QB [auth N]IPR002906Small ribosomal subunit protein eS31Domain
QB [auth N]IPR019956Ubiquitin domainDomain
QB [auth N]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
QB [auth N]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
G [auth AF]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
G [auth AF]IPR001569Large ribosomal subunit protein eL37Family
G [auth AF]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
G [auth AF]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RB [auth O]IPR019775WD40 repeat, conserved siteConserved Site
RB [auth O]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
RB [auth O]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
RB [auth O]IPR045223Small ribosomal subunit protein RACK1-likeFamily
RB [auth O]IPR001680WD40 repeatRepeat
RB [auth O]IPR020472G-protein beta WD-40 repeatRepeat
TB [auth Q]IPR001593Small ribosomal subunit protein eS1Family
TB [auth Q]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
TB [auth Q]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
UB [auth R]IPR000851Small ribosomal subunit protein uS5Family
UB [auth R]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
UB [auth R]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
UB [auth R]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
UB [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
UB [auth R]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
UB [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
WB [auth T]IPR014401Small ribosomal subunit protein eS6-likeFamily
WB [auth T]IPR001377Small ribosomal subunit protein eS6Family
WB [auth T]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
YB [auth V]IPR001047Small ribosomal subunit protein eS8Family
YB [auth V]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
YB [auth V]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
YB [auth V]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
ZB [auth W]IPR002942RNA-binding S4 domainDomain
ZB [auth W]IPR022801Small ribosomal subunit protein uS4Family
ZB [auth W]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
ZB [auth W]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
ZB [auth W]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
ZB [auth W]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AC [auth X]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
AC [auth X]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
AC [auth X]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AC [auth X]IPR000266Small ribosomal subunit protein uS17Family
AC [auth X]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
H [auth AG]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
H [auth AG]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
H [auth AG]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
H [auth AG]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
H [auth AG]IPR002132Large ribosomal subunit protein uL5Family
BC [auth Y]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
BC [auth Y]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BC [auth Y]IPR000589Small ribosomal subunit protein uS15Family
BC [auth Y]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
CC [auth Z]IPR001971Small ribosomal subunit protein uS11Family
CC [auth Z]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
CC [auth Z]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
DC [auth I]IPR001266Small ribosomal subunit protein eS19Family
DC [auth I]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
DC [auth I]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
DC [auth I]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
I [auth AH]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
I [auth AH]IPR013025Large ribosomal subunit protein uL23-likeFamily
I [auth AH]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
I [auth AH]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
I [auth AH]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain