6Q5U | pdb_00006q5u

High resolution electron cryo-microscopy structure of the bacteriophage PR772

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d6q5ul1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
L	d6q5ul2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
K	d6q5uk1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
K	d6q5uk2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
J	d6q5uj1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
J	d6q5uj2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
I	d6q5ui1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
I	d6q5ui2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
H	d6q5uh1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
H	d6q5uh2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
G	d6q5ug1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
G	d6q5ug2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
F	d6q5uf1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
F	d6q5uf2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
E	d6q5ue1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
E	d6q5ue2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
D	d6q5ud1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
D	d6q5ud2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
C	d6q5uc1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
C	d6q5uc2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
B	d6q5ub1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
B	d6q5ub2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
A	d6q5ua1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
A	d6q5ua2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
S	DUF1859	e6q5uS1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF1859	ECOD (1.6)
R	DUF1859	e6q5uR1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF1859	ECOD (1.6)
Q	DUF1859	e6q5uQ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF1859	ECOD (1.6)
P	DUF1859	e6q5uP1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF1859	ECOD (1.6)
O	DUF1859	e6q5uO1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: DUF1859	ECOD (1.6)
N	DUF1970	e6q5uN1	A: few secondary structure elements	X: Protein P16 (From Topology)	H: Protein P16 (From Topology)	T: Protein P16	F: DUF1970	ECOD (1.6)
M	Tecti-min-caps	e6q5uM1	A: few secondary structure elements	X: Protein P30 (From Topology)	H: Protein P30 (From Topology)	T: Protein P30	F: Tecti-min-caps	ECOD (1.6)
L	Phage_Capsid_P3_2nd	e6q5uL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
L	Phage_Capsid_P3_1st	e6q5uL2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
K	Phage_Capsid_P3_2nd	e6q5uK2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
K	Phage_Capsid_P3_1st	e6q5uK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
J	Phage_Capsid_P3_2nd	e6q5uJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
J	Phage_Capsid_P3_1st	e6q5uJ2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
I	Phage_Capsid_P3_2nd	e6q5uI2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
I	Phage_Capsid_P3_1st	e6q5uI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
H	Phage_Capsid_P3_2nd	e6q5uH2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
H	Phage_Capsid_P3_1st	e6q5uH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
G	Phage_Capsid_P3_2nd	e6q5uG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
G	Phage_Capsid_P3_1st	e6q5uG2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
F	Phage_Capsid_P3_2nd	e6q5uF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
F	Phage_Capsid_P3_1st	e6q5uF2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
E	Phage_Capsid_P3_2nd	e6q5uE2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
E	Phage_Capsid_P3_1st	e6q5uE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
D	Phage_Capsid_P3_2nd	e6q5uD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
D	Phage_Capsid_P3_1st	e6q5uD2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
C	Phage_Capsid_P3_2nd	e6q5uC2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
C	Phage_Capsid_P3_1st	e6q5uC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
B	Phage_Capsid_P3_2nd	e6q5uB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
B	Phage_Capsid_P3_1st	e6q5uB2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
A	Phage_Capsid_P3_2nd	e6q5uA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
A	Phage_Capsid_P3_1st	e6q5uA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
L	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
K	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
K	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
J	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
J	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
I	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
I	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
H	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
H	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
G	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
G	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
F	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
F	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
E	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
E	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
D	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
D	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
C	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
C	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
B	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
B	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
A	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
O, P, Q	PF08949	Bacteriophage PRD1, spike protein P5, C-terminal (PRD1_P5_C)	Bacteriophage PRD1, spike protein P5, C-terminal	This domain is found at the C-terminal of bacteriophage PRD1 spike protein P5. [1]. The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This C-terminal domain appears to contain t ...	This domain is found at the C-terminal of bacteriophage PRD1 spike protein P5. [1]. The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This C-terminal domain appears to contain the residues responsible for the trimerization of the protein [1,2].	Domain
O, P, Q	PF08948	Bacteriophage PRD1, P5, spike N-terminal (PRD1_P5_spike_N)	Bacteriophage PRD1, P5, spike N-terminal	The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This domain is found at the N-terminal of bacteriophage PRD1 spike protein P5 and mediates the interaction with protein P31. Th ...	The spike structure of bacteriophage PRD1 is comprised of proteins P2, P5, and P31. P5 is an elongated multidomain trimer. This domain is found at the N-terminal of bacteriophage PRD1 spike protein P5 and mediates the interaction with protein P31. The C-terminal domain appears to contain the residues responsible for the trimerization of the protein [1,2].	Domain
M	PF09300	Tectiviridae, minor capsid (Tecti-min-caps)	Tectiviridae, minor capsid	Members of this family form the minor capsid protein of various Tectiviridae [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF09018	P3 major capsid protein N-terminal (Phage_Capsid_P3_N)	P3 major capsid protein N-terminal	The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and ...	The P3 major capsid protein adopts a 'double-barrel' structure comprising two eight-stranded viral beta-barrels or jelly rolls, each of which contains a 12-residue alpha-helix. This protein then trimerises through a 'trimerisation loop' sequence, and is incorporated within the viral capsid [1]. This entry represents the N-terminal domain of the P3 protein.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
R, S	Penton protein	-	-	-
O, P, Q	Spike protein	-	-	-
N	Infectivity Protein (P16)	-	-	cellular anatomical structure membrane
M	Minor Capsid Protein (P30)	-	-	viral capsid virion component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Major Capsid Protein (P3)	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
R, S	IPR015043	Bacteriophage PRD1, P5, spike N-terminal	Domain
O, P, Q	IPR015043	Bacteriophage PRD1, P5, spike N-terminal	Domain
O, P, Q	IPR038663	Bacteriophage PRD1, P5 C-terminal domain superfamily	Homologous Superfamily
O, P, Q	IPR015044	Bacteriophage PRD1, spike protein P5, C-terminal	Domain
M	IPR015379	Minor capsid protein P30, tectiviridae	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR015108	P3, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR057669	P3, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016115	Bacteriophage PRD1, P3, N-terminal	Homologous Superfamily