6Q5U | pdb_00006q5u

High resolution electron cryo-microscopy structure of the bacteriophage PR772

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d6q5ul1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
L	d6q5ul2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
K	d6q5uk1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
K	d6q5uk2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
J	d6q5uj1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
J	d6q5uj2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
I	d6q5ui1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
I	d6q5ui2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
H	d6q5uh1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
H	d6q5uh2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
G	d6q5ug1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
G	d6q5ug2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
F	d6q5uf1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
F	d6q5uf2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
E	d6q5ue1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
E	d6q5ue2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
D	d6q5ud1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
D	d6q5ud2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
C	d6q5uc1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
C	d6q5uc2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
B	d6q5ub1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
B	d6q5ub2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
A	d6q5ua1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)
A	d6q5ua2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	automated matches	automated matches	(Enterobacteria phage PR772 ) [TaxId: 261665 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
S	e6q5uS1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
R	e6q5uR1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
Q	e6q5uQ1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
P	e6q5uP1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
O	e6q5uO1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
N	e6q5uN1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
M	e6q5uM1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
L	e6q5uL1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
K	e6q5uK1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
J	e6q5uJ1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
I	e6q5uI1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
H	e6q5uH1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
G	e6q5uG1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
F	e6q5uF1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
E	e6q5uE1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
D	e6q5uD1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
C	e6q5uC1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
B	e6q5uB1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)
A	e6q5uA1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: CbiA, ArsA_ATPase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
L	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
K	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
K	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
J	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
J	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
I	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
I	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
H	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
H	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
G	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
G	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
F	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
F	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
E	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
E	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
D	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
D	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
C	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
C	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
B	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
B	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)
A	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (utative)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
R, S	Penton protein	-	-	-
O, P, Q	Spike protein	-	-	-
N	Infectivity Protein (P16)	-	-	-
M	Minor Capsid Protein (P30)	-	-	viral capsid virion component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Major Capsid Protein (P3)	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
R, S	IPR015043	Bacteriophage PRD1, P5, spike N-terminal	Domain
O, P, Q	IPR015043	Bacteriophage PRD1, P5, spike N-terminal	Domain
O, P, Q	IPR038663	Bacteriophage PRD1, P5 C-terminal domain superfamily	Homologous Superfamily
O, P, Q	IPR015044	Bacteriophage PRD1, spike protein P5, C-terminal	Domain
M	IPR015379	Minor capsid protein P30, tectiviridae	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR015108	P3, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR057669	P3, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016115	Bacteriophage PRD1, P3, N-terminal	Homologous Superfamily