6Q5U | pdb_00006q5u

High resolution electron cryo-microscopy structure of the bacteriophage PR772


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ld6q5ul1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Ld6q5ul2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Kd6q5uk1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Kd6q5uk2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Jd6q5uj1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Jd6q5uj2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Id6q5ui1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Id6q5ui2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Hd6q5uh1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Hd6q5uh2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Gd6q5ug1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Gd6q5ug2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Fd6q5uf1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Fd6q5uf2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Ed6q5ue1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Ed6q5ue2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Dd6q5ud1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Dd6q5ud2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Cd6q5uc1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Cd6q5uc2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Bd6q5ub1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Bd6q5ub2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Ad6q5ua1 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP Coat protein p3 automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)
Ad6q5ua2 All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Group II dsDNA viruses VP automated matches automated matches (Enterobacteria phage PR772 ) [TaxId: 261665 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
SDUF1859e6q5uS1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF1859ECOD (1.6)
RDUF1859e6q5uR1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF1859ECOD (1.6)
QDUF1859e6q5uQ1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF1859ECOD (1.6)
PDUF1859e6q5uP1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF1859ECOD (1.6)
ODUF1859e6q5uO1 A: beta barrelsX: SH3H: SH3T: SH3F: DUF1859ECOD (1.6)
NDUF1970e6q5uN1 A: few secondary structure elementsX: Protein P16 (From Topology)H: Protein P16 (From Topology)T: Protein P16F: DUF1970ECOD (1.6)
MTecti-min-capse6q5uM1 A: few secondary structure elementsX: Protein P30 (From Topology)H: Protein P30 (From Topology)T: Protein P30F: Tecti-min-capsECOD (1.6)
LPhage_Capsid_P3_2nde6q5uL1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
LPhage_Capsid_P3_1ste6q5uL2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
KPhage_Capsid_P3_2nde6q5uK2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
KPhage_Capsid_P3_1ste6q5uK1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
JPhage_Capsid_P3_2nde6q5uJ1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
JPhage_Capsid_P3_1ste6q5uJ2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
IPhage_Capsid_P3_2nde6q5uI2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
IPhage_Capsid_P3_1ste6q5uI1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
HPhage_Capsid_P3_2nde6q5uH2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
HPhage_Capsid_P3_1ste6q5uH1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
GPhage_Capsid_P3_2nde6q5uG1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
GPhage_Capsid_P3_1ste6q5uG2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
FPhage_Capsid_P3_2nde6q5uF1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
FPhage_Capsid_P3_1ste6q5uF2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
EPhage_Capsid_P3_2nde6q5uE2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
EPhage_Capsid_P3_1ste6q5uE1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
DPhage_Capsid_P3_2nde6q5uD1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
DPhage_Capsid_P3_1ste6q5uD2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
CPhage_Capsid_P3_2nde6q5uC2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
CPhage_Capsid_P3_1ste6q5uC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
BPhage_Capsid_P3_2nde6q5uB1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
BPhage_Capsid_P3_1ste6q5uB2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)
APhage_Capsid_P3_2nde6q5uA1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_2ndECOD (1.6)
APhage_Capsid_P3_1ste6q5uA2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Phage_Capsid_P3_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
L2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
K2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
K2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
J2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
J2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
I2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
I2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
H2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
H2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
G2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
G2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
F2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
F2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
E2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
E2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
D2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
D2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
C2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
B2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)
A2.70.9.30 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon domain 4CATH (utative)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
R, S
Penton protein- - -
O, P, Q
Spike protein- - -
Infectivity Protein (P16)- - -
Minor Capsid Protein (P30)- -
A, B, C, D, E
Major Capsid Protein (P3)- -

InterPro: Protein Family Classification InterPro Database Homepage