6Q2K | pdb_00006q2k

The structure of the Streptococcus gordonii surface protein SspB in complex with TEV peptide provides clues to the adherence of oral streptococcal adherence to salivary agglutinin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	V-region of surface antigen I/II (SA I/II, PAC)	8076867	3000865	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GbpC	e6q2kA1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: V-region of surface antigen I/II (SA I/II, PAC) (From Topology)	T: V-region of surface antigen I/II (SA I/II, PAC)	F: GbpC	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.530.10	Mainly Beta	Sandwich	Major cell-surface adhesin PAc	Major cell-surface adhesin PAc	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Agglutinin receptor	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR009578	Cell surface antigen I/II A repeat	Repeat
A	IPR013574	Glucan-binding protein C/Surface antigen I/II, V-domain	Domain
A	IPR041324	Antigen I/II, N-terminal	Domain
A	IPR032300	Cell surface antigen, C-terminal	Domain
A	IPR036234	Glucan-binding protein C/Surface antigen I/II, V-domain superfamily	Homologous Superfamily
A	IPR026345	Adhesin isopeptide-forming adherence domain	Domain
A	IPR021197	Cross-wall-targeting lipoprotein motif	Conserved Site
A	IPR019931	LPXTG cell wall anchor motif	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.