6Q23 | pdb_00006q23

Crystal structure of human 1G01 Fab in complex with influenza virus neuraminidase from A/California/04/2009 (H1N1)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Sialidases	8071676	3001607	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Sialidases	8071676	3001607	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Sialidases	8071676	3001607	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	Sialidases	8071676	3001607	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth K]	Beta_helix, CatAgl_D2	e6q23K1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
J [auth I]	Beta_helix, CatAgl_D2	e6q23I1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
H [auth F]	Beta_helix, CatAgl_D2	e6q23F1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
F [auth L]	HTH_ParB	e6q23L1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: HTH_ParB	ECOD (develop294)
K [auth J]	Beta_helix, CatAgl_D2	e6q23J1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
I [auth G]	Beta_helix, CatAgl_D2	e6q23G1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
G [auth E]	Beta_helix, CatAgl_D2	e6q23E1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
E [auth H]	HTH_ParB	e6q23H1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: HTH_ParB	ECOD (develop294)
D	Beta_helix, CatAgl_D2	e6q23D1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
C [auth A]	Beta_helix, CatAgl_D2	e6q23A1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
B	Beta_helix, CatAgl_D2	e6q23B1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Beta_helix, CatAgl_D2	ECOD (develop294)
A [auth C]	HTH_ParB	e6q23C1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: HTH_ParB	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L [auth K]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
J [auth I]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
H [auth F]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
F [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
K [auth J]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
I [auth G]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
G [auth E]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
E [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
D	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
C [auth A]	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
B	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)
A [auth C]	2.120.10.10	Mainly Beta	6 Propeller	Neuraminidase		CATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
F [auth L], H [auth F], J [auth I], L [auth K]	Fab 1G04, broadly protective	L-KAPPA	Homo sapiens (human)	IGKV1-901, IGKJ301, IGKC*01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-1_KAPPA	IMGT (202610-0)
E [auth H], G [auth E], I [auth G], K [auth J]	Fab 1G04, broadly protective	VH-CH1	Homo sapiens (human)	IGHV3-2004, IGHJ201, IGHG103, IGHG108, IGHG1*06	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-1_KAPPA	IMGT (202610-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
F [auth L], H [auth F], J [auth I], L [auth K]	Light Chain	IGKV1	Kappa	neuraminidase	SAbDab (2026-03-20)
E [auth H], G [auth E], I [auth G], K [auth J]	Heavy Chain	IGHV3	-	neuraminidase	SAbDab (2026-03-20)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth L], H [auth F], J [auth I], L [auth K]	1G01 Fab kappa light chain	-	-	-
E [auth H], G [auth E], I [auth G], K [auth J]	1G01 Fab IgG1 heavy chain	-	-	-
A [auth C], B, C [auth A], D	Neuraminidase	cation binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding hydrolase activity, acting on glycosyl bonds alpha-sialidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity exo-alpha-sialidase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral process viral budding from plasma membrane carbohydrate metabolic process primary metabolic process metabolic process cellular process biological process involved in interspecies interaction between organisms non-lytic viral release viral budding viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly exit from host cell viral process viral budding from plasma membrane viral release from host cell	cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part virion component virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B, C [auth A], D	IPR001860	Glycoside hydrolase, family 34	Family
A [auth C], B, C [auth A], D	IPR033654	Sialidase, Influenza viruses A/B	Domain
A [auth C], B, C [auth A], D	IPR036278	Sialidase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.