6PZW | pdb_00006pzw

CryoEM derived model of NA-22 Fab in complex with N9 Shanghai2


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6pzwa_ All beta proteins 6-bladed beta-propeller Sialidases Sialidases (neuraminidases) Influenza neuraminidase (Influenza A virus (A/environment/Shanghai/S1439/2013(H7N9)) ) [TaxId: 1347105 ], SCOPe (2.08)
Dd6pzwd_ All beta proteins 6-bladed beta-propeller Sialidases Sialidases (neuraminidases) Influenza neuraminidase (Influenza A virus (A/environment/Shanghai/S1439/2013(H7N9)) ) [TaxId: 1347105 ], SCOPe (2.08)
I [auth C]d6pzwc_ All beta proteins 6-bladed beta-propeller Sialidases Sialidases (neuraminidases) Influenza neuraminidase (Influenza A virus (A/environment/Shanghai/S1439/2013(H7N9)) ) [TaxId: 1347105 ], SCOPe (2.08)
J [auth B]d6pzwb_ All beta proteins 6-bladed beta-propeller Sialidases Sialidases (neuraminidases) Influenza neuraminidase (Influenza A virus (A/environment/Shanghai/S1439/2013(H7N9)) ) [TaxId: 1347105 ], SCOPe (2.08)
B [auth I]d6pzwi1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6pzwe1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd6pzwg1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth L]d6pzwl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth K]d6pzwk_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6pzwf_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth J]d6pzwj_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
L [auth H]d6pzwh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilySialidases 8093684 3001607 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySialidases 8093684 3001607 SCOP2B (2022-06-29)
I [auth C]SCOP2B SuperfamilySialidases 8093684 3001607 SCOP2B (2022-06-29)
J [auth B]SCOP2B SuperfamilySialidases 8093684 3001607 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AATP-synte6pzwA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
DATP-synte6pzwD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
I [auth C]ATP-synte6pzwC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
J [auth B]ATP-synte6pzwB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
C [auth K]ATP-synte6pzwK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
FATP-synte6pzwF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
H [auth J]ATP-synte6pzwJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)
L [auth H]ATP-synte6pzwH1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: ATP-syntECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)
D2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)
I [auth C]2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)
J [auth B]2.120.10.10 Mainly Beta 6 Propeller Neuraminidase CATH (utative)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth I],
E,
G,
K [auth L]
Fab NA-22, anti-N9 L-LAMBDA Homo sapiens (human) IGLV2-14*01, IGLJ1*01, IGLC2*01, IGLC2*02, IGLC3*04 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202613-0)
C [auth K],
F,
H [auth J],
L [auth H]
Fab NA-22, anti-N9 VH-CH1 Homo sapiens (human) IGHV3-30*18, IGHV3-30-5*01, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*03, IGHG1*08, IGHG1*06 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202613-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth I],
E,
G,
K [auth L]
Light ChainIGLV2 LambdaneuraminidaseSAbDab (2026-04-10)
C [auth K],
F,
H [auth J],
L [auth H]
Heavy ChainIGHV3 -neuraminidaseSAbDab (2026-04-10)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D,
I [auth C],
J [auth B]
Neuraminidase
B [auth I],
E,
G,
K [auth L]
NA-22 fragment antigen binding light chain---
C [auth K],
F,
H [auth J],
L [auth H]
NA-22 fragment antigen binding heavy chain---