6PYT | pdb_00006pyt

CryoEM Structure of Pyocin R2 - precontracted - trunk

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
X [auth f]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
W [auth e]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
V [auth d]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
U [auth c]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
T [auth b]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
S [auth r]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
R [auth q]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
Q [auth p]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
P [auth o]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
O [auth n]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
N [auth a]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
A [auth m]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth F]Phage_sheath_1Ce6pytF2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
M [auth F]Phage_sheath_1e6pytF1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
L [auth E]Phage_sheath_1Ce6pytE1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
L [auth E]Phage_sheath_1e6pytE2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
K [auth D]Phage_sheath_1Ce6pytD2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
K [auth D]Phage_sheath_1e6pytD1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
J [auth C]Phage_sheath_1Ce6pytC2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
J [auth C]Phage_sheath_1e6pytC1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
I [auth B]Phage_sheath_1Ce6pytB1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
I [auth B]Phage_sheath_1e6pytB2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
H [auth R]Phage_sheath_1Ce6pytR2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
H [auth R]Phage_sheath_1e6pytR1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
G [auth Q]Phage_sheath_1Ce6pytQ1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
G [auth Q]Phage_sheath_1e6pytQ2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
F [auth P]Phage_sheath_1Ce6pytP2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
F [auth P]Phage_sheath_1e6pytP1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
E [auth O]Phage_sheath_1Ce6pytO2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
E [auth O]Phage_sheath_1e6pytO1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
D [auth N]Phage_sheath_1Ce6pytN1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
D [auth N]Phage_sheath_1e6pytN2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
C [auth A]Phage_sheath_1Ce6pytA1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
C [auth A]Phage_sheath_1e6pytA2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
B [auth M]Phage_sheath_1Ce6pytM1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
B [auth M]Phage_sheath_1e6pytM2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
X [auth f]Phage_tubee6pytf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
W [auth e]Phage_tubee6pyte1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
V [auth d]Phage_tubee6pytd1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
U [auth c]Phage_tubee6pytc1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
T [auth b]Phage_tubee6pytb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
S [auth r]Phage_tubee6pytr1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
R [auth q]Phage_tubee6pytq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
Q [auth p]Phage_tubee6pytp1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
P [auth o]Phage_tubee6pyto1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
O [auth n]Phage_tubee6pytn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
N [auth a]Phage_tubee6pyta1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
A [auth m]Phage_tubee6pytm1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4]. Domain
PF22671Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)Tail sheath protein Gp18 domain III N-terminal regionThis entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti-parallel beta-strands plus six alpha-helices, which surround the beta-sheet.
Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure. Domain
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR052042Tail sheath structural proteinFamily
IPR020287Tail sheath protein, C-terminal domainDomain
IPR054564Tail sheath protein Gp18-like, domain III N-terminal regionDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR052042Tail sheath structural proteinFamily
IPR006498Tail tube proteinFamily