6PVK | pdb_00006pvk

Bacterial 45SRbgA ribosomal particle class A


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082419 3000334 SCOP2B (2022-06-29)
H [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8089014 3000995 SCOP2B (2022-06-29)
F [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8072020 3000433 SCOP2B (2022-06-29)
E [auth J]SCOP2B SuperfamilyRibosomal protein L13 8066055 3001134 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyRibosomal protein L4 8080694 3001146 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyTranslational proteins 8089142 3000811 SCOP2B (2022-06-29)
P [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8076730 3000713 SCOP2B (2022-06-29)
O [auth b]SCOP2B SuperfamilyZn-binding ribosomal proteins 8081585 3001320 SCOP2B (2022-06-29)
N [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082505 3000334 SCOP2B (2022-06-29)
M [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8077095 3000210 SCOP2B (2022-06-29)
L [auth S]SCOP2B SuperfamilyRibosomal protein L22 8076724 3001078 SCOP2B (2022-06-29)
K [auth R]SCOP2B Superfamilyl21p-like 8082437 3002005 SCOP2B (2022-06-29)
J [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8075004 3000563 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth P]Ribosomal_L19e6pvkP1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
H [auth N]Ribosomal_L17_1e6pvkN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
G [auth L]Ribosomal_L27Ae6pvkL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
F [auth K]Ribosomal_L14e6pvkK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
E [auth J]Ribosomal_L13e6pvkJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
D [auth E]Ribosomal_L4e6pvkE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
C [auth D]Ribosomal_L3e6pvkD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
B [auth C]Ribosomal_L2_1e6pvkC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
B [auth C]Ribosomal_L2_C_2e6pvkC2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
Q [auth d]Ribosomal_L34e6pvkd1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
P [auth Y]Ribosomal_L29e6pvkY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
O [auth b]Ribosomal_L32pe6pvkb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
N [auth U]ribosomal_L24_1e6pvkU1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
M [auth T]Ribosomal_L23_2e6pvkT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
L [auth S]Ribosomal_L22e6pvkS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
K [auth R]Ribosomal_L21pe6pvkR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
J [auth Q]Ribosomal_L20e6pvkQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
H [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
G [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
E [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
C [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
B [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
B [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
P [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
N [auth U]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
N [auth U]PF00467KOW motif (KOW)KOW motif- Family
M [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
L [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
J [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth P]50S ribosomal protein L19
H [auth N]50S ribosomal protein L17
G [auth L]50S ribosomal protein L15
F [auth K]50S ribosomal protein L14
E [auth J]50S ribosomal protein L13
D [auth E]50S ribosomal protein L4
C [auth D]50S ribosomal protein L3
B [auth C]50S ribosomal protein L2
Q [auth d]50S ribosomal protein L34
P [auth Y]50S ribosomal protein L29
O [auth b]50S ribosomal protein L32
N [auth U]50S ribosomal protein L24
M [auth T]50S ribosomal protein L23
L [auth S]50S ribosomal protein L22
K [auth R]50S ribosomal protein L21
J [auth Q]50S ribosomal protein L20
23S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth P]IPR001857Large ribosomal subunit protein bL19Family
I [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
I [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
I [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
H [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
H [auth N]IPR000456Large ribosomal subunit protein bL17Family
G [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
G [auth L]IPR030878Large ribosomal subunit protein uL15Family
G [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
G [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
G [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
F [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
F [auth K]IPR000218Large ribosomal subunit protein uL14Family
F [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
F [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
E [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
E [auth J]IPR005822Large ribosomal subunit protein uL13Family
E [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
E [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
D [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
D [auth E]IPR002136Large ribosomal subunit protein uL4Family
D [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
C [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
C [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
C [auth D]IPR000597Large ribosomal subunit protein uL3Family
B [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
B [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
B [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
B [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
B [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
B [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
B [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
B [auth C]IPR002171Large ribosomal subunit protein uL2Family
Q [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Q [auth d]IPR000271Large ribosomal subunit protein bL34Family
P [auth Y]IPR050063Universal ribosomal protein uL29Family
P [auth Y]IPR001854Large ribosomal subunit protein uL29Family
P [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
O [auth b]IPR002677Large ribosomal subunit protein bL32Family
O [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
O [auth b]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
N [auth U]IPR003256Large ribosomal subunit protein uL24Family
N [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
N [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth U]IPR005824KOWDomain
N [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
M [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
M [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
M [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
L [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
L [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
L [auth S]IPR001063Large ribosomal subunit protein uL22Family
L [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
L [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
K [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
K [auth R]IPR001787Large ribosomal subunit protein bL21Family
K [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
K [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
J [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
J [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
J [auth Q]IPR005813Large ribosomal subunit protein bL20Family