6PSD | pdb_00006psd

Complex of CRACR2a with a Dynein Light Intermediate Chain Peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth O]	BTB_2	e6psdO1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)
G [auth M]	BTB_2	e6psdM1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)
F [auth K]	BTB_2	e6psdK1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)
E [auth I]	BTB_2	e6psdI1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)
D [auth G]	BTB_2	e6psdG1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)
C [auth A]	BTB_2	e6psdA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)
B [auth C]	BTB_2	e6psdC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)
A [auth E]	BTB_2	e6psdE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: BTB_2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	PF13499	EF-hand domain pair (EF-hand_7)	EF-hand domain pair		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], N [auth L], O [auth N], P	cDNA FLJ10219 fis, clone HEMBA1007018, highly similar to Cytoplasmic dynein 1 light intermediate chain 1	RNA binding binding nucleic acid binding protein-macromolecule adaptor activity molecular adaptor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding RNA binding binding nucleic acid binding protein-macromolecule adaptor activity molecular adaptor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding guanyl nucleotide binding GDP binding guanyl ribonucleotide binding protein binding dynein heavy chain binding	cellular process cell division cellular response to stimulus positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division cellular process cell division cellular response to stimulus positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication regulation of cell cycle checkpoint negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle mitotic sister chromatid separation chromosome segregation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling regulation of biological process negative regulation of cellular component organization regulation of cell cycle process regulation of spindle checkpoint sister chromatid segregation positive regulation of intracellular signal transduction regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of response to stimulus positive regulation of mitotic cell cycle spindle assembly checkpoint regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of cellular component organization regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle regulation of mitotic spindle checkpoint signaling regulation of mitotic cell cycle spindle assembly checkpoint spindle assembly checkpoint signaling positive regulation of biological process cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization positive regulation of response to stimulus regulation of mitotic cell cycle regulation of intracellular signal transduction negative regulation of cellular process mitotic sister chromatid segregation positive regulation of cell cycle process negative regulation of mitotic metaphase/anaphase transition cellular component organization or biogenesis regulation of cell cycle negative regulation of chromosome separation positive regulation of cellular process cell cycle process positive regulation of spindle checkpoint mitotic nuclear division regulation of signaling negative regulation of mitotic cell cycle phase transition organelle fission biological regulation chromosome organization negative regulation of cell cycle process positive regulation of cell cycle cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling organelle organization nuclear division negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle regulation of cell communication metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition positive regulation of signaling regulation of localization regulation of transport transport regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport localization microtubule-based movement microtubule-based process microtubule cytoskeleton organization cytoskeleton organization	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane centrosome microtubule organizing center cytoplasm intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane centrosome microtubule organizing center cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane endocytic vesicle membrane vesicle organelle membrane endocytic vesicle endosome membrane endosome recycling endosome endomembrane system recycling endosome membrane secretory granule secretory vesicle secretory granule membrane chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome ficolin-1-rich granule membrane ficolin-1-rich granule tertiary granule protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	EF-hand calcium-binding domain-containing protein 4B	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding pyrophosphatase activity GTPase activity G protein activity ribonucleoside triphosphate phosphatase activity molecular function regulator activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	localization store-operated calcium entry transport monoatomic ion transport monoatomic cation transport establishment of localization calcium ion transport metal ion transport response to stimulus immune response immune system process adaptive immune response response to histamine response to chemical localization store-operated calcium entry transport monoatomic ion transport monoatomic cation transport establishment of localization calcium ion transport metal ion transport response to stimulus immune response immune system process adaptive immune response response to histamine response to chemical response to nitrogen compound adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains multicellular organismal process cellular developmental process cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation cell activation involved in immune response CD4-positive, alpha-beta T cell differentiation leukocyte activation alpha-beta T cell differentiation T cell activation involved in immune response alpha-beta T cell activation involved in immune response T cell activation cell differentiation CD4-positive, alpha-beta T cell activation leukocyte activation involved in immune response anatomical structure development alpha-beta T cell activation T cell differentiation lymphocyte activation involved in immune response developmental process T-helper cell differentiation hemopoiesis cell activation T cell differentiation involved in immune response T-helper 1 type immune response immune effector process T-helper 1 cell differentiation cellular process leukocyte differentiation cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus positive regulation of JNK cascade regulation of intracellular signal transduction JNK cascade intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of MAPK cascade biological regulation regulation of JNK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication positive regulation of signaling cellular localization establishment of localization in cell intracellular transport vesicle-mediated transport endosomal transport regulation of localization regulation of calcium ion transport positive regulation of calcium ion transport regulation of transport regulation of monoatomic ion transport positive regulation of transport positive regulation of monoatomic ion transport regulation of metal ion transport positive regulation of cation transmembrane transport monoatomic ion transmembrane transport regulation of transmembrane transporter activity regulation of monoatomic ion transmembrane transport activation of store-operated calcium channel activity monoatomic cation transmembrane transport positive regulation of molecular function regulation of store-operated calcium channel activity positive regulation of transmembrane transport positive regulation of monoatomic ion transmembrane transport positive regulation of store-operated calcium channel activity positive regulation of cation channel activity transmembrane transport regulation of molecular function regulation of transmembrane transport positive regulation of transporter activity positive regulation of ion transmembrane transporter activity regulation of monoatomic cation transmembrane transport macromolecule localization intracellular protein localization	cellular anatomical structure membrane membrane-bounded organelle organelle vesicle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle Weibel-Palade body secretory granule clathrin-coated vesicle cellular anatomical structure membrane membrane-bounded organelle organelle vesicle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle Weibel-Palade body secretory granule clathrin-coated vesicle secretory vesicle coated vesicle cytoplasm cell periphery plasma membrane immunological synapse extracellular region Golgi membrane Golgi apparatus bounding membrane of organelle organelle membrane Golgi apparatus subcompartment organelle subcompartment trans-Golgi network membrane trans-Golgi network microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton vesicle lumen membrane-enclosed lumen cytoplasmic vesicle lumen secretory granule lumen intracellular organelle lumen organelle lumen specific granule lumen specific granule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], N [auth L], O [auth N], P	IPR022780	Dynein family light intermediate chain	Family
I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], N [auth L], O [auth N], P	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], N [auth L], O [auth N], P	IPR008467	Dynein 1 light intermediate chain	Family
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	IPR002048	EF-hand domain	Domain
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	IPR011992	EF-hand domain pair	Homologous Superfamily
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	IPR005225	Small GTP-binding domain	Domain
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	IPR001806	Small GTPase	Family
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	IPR050227	Ras-related protein Rab	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], I [auth F], J [auth D], K [auth B], L [auth H], M [auth J], N [auth L], O [auth N], P	Pharos: Q9Y6G9	amyotrophic lateral sclerosis breast cancer malignant ependymoma osteosarcoma astrocytic tumor glioblastoma malignant glioma ovarian cancer atypical teratoid rhabdoid tumor invasive ductal breast carcinoma malignant mesothelioma subependymal giant cell astrocytoma
A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], A [auth E], B [auth C], C [auth A], D [auth G], E [auth I], F [auth K], G [auth M], H [auth O]	Pharos: Q9BSW2	acute myeloid leukemia gastric carcinoma large cell medulloblastoma medulloblastoma pancreatic intraductal papillary-mucinous neoplasm breast cancer glioblastoma lung carcinoma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia breast fibroadenoma interstitial cystitis malignant glioma pancreatic intraductal papillary-mucinous carcinoma periodontitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.