6PPD | pdb_00006ppd

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth 1]EBV-NA1e6ppd11 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: EBV-NA1ECOD (develop294)
H [auth A]EBV-NA1e6ppdA1 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: EBV-NA1ECOD (develop294)
F [auth 3]EBV-NA1e6ppd31 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: EBV-NA1ECOD (develop294)
C [auth 2]EBV-NA1e6ppd21 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: EBV-NA1ECOD (develop294)
A [auth 0]EBV-NA1e6ppd01 A: alpha bundlesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: EBV-NA1ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth W],
D [auth S],
E [auth T],
G [auth 4],
P [auth X]		PF03122Herpes virus major capsid protein (Herpes_MCP)Herpes virus major capsid protein- Family
I [auth 5],
L [auth b]		PF03327Herpesvirus capsid shell protein VP19C (Herpes_VP19C)Herpesvirus capsid shell protein VP19C- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0],
C [auth 2],
F [auth 3],
H [auth A],
O [auth 1]		Small capsomere-interacting protein-
B [auth W],
D [auth S],
E [auth T],
G [auth 4],
P [auth X]		Major capsid protein -
I [auth 5],
L [auth b]		Triplex capsid protein 1
J [auth 6],
K [auth 7],
M [auth c],
N [auth d]		Triplex capsid protein 2 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0],
C [auth 2],
F [auth 3],
H [auth A],
O [auth 1]		IPR009299Gammaherpesvirus capsidFamily
B [auth W],
D [auth S],
E [auth T],
G [auth 4],
P [auth X]		IPR000912Herpesvirus major capsid proteinFamily
B [auth W],
D [auth S],
E [auth T],
G [auth 4],
P [auth X]		IPR023233Herpesvirus major capsid protein, upper domain superfamilyHomologous Superfamily
I [auth 5],
L [auth b]		IPR004999Herpesvirus capsid shell protein 1Family
J [auth 6],
K [auth 7],
M [auth c],
N [auth d]		IPR002690Herpesvirus capsid protein 2Family