6PO2 | pdb_00006po2

In situ structure of BTV RNA-dependent RNA polymerase in BTV core

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)
I	SCOP2 Family	Orbivirus core	8099209	4002956	SCOP2 (2022-06-29)
I	SCOP2 Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2 (2022-06-29)
H	SCOP2B Superfamily	Reovirus inner layer core protein p3	8099210	3001935	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Bystin	e6po2B1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
C	Bystin	e6po2C1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
D	Bystin	e6po2D1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
E	Bystin	e6po2E1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
F	Bystin	e6po2F1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
G	Bystin	e6po2G1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
K	Bystin	e6po2K1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
J	Bystin	e6po2J1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
I	Bystin	e6po2I1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)
H	Bystin	e6po2H1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, C, D, E, F B, C, D, E, F, G, H, I, J, K	Inner core structural protein VP3	structural molecule activity	-	virion component
A	RNA-directed RNA polymerase	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process viral genome replication viral process viral life cycle	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, C, D, E, F B, C, D, E, F, G, H, I, J, K	IPR016029	Inner layer core protein VP3, Reovirus	Homologous Superfamily
B, C, D, E, F B, C, D, E, F, G, H, I, J, K	IPR002614	Inner layer core protein VP3, Orbivirus	Family
A	IPR008723	RNA-dependent RNA polymerase, orbiviral	Family
A	IPR007097	RNA-directed RNA polymerase, reovirus	Domain
A	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.