6PNJ | pdb_00006pnj

Structure of Photosystem I Acclimated to Far-red Light


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
QSCOP2 FamilySubunit III of photosystem I reaction centre, PsaF 8095298 4002091 SCOP2 (2022-06-29)
QSCOP2 SuperfamilySubunit III of photosystem I reaction centre, PsaF 8095299 3000813 SCOP2 (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8095299 3000813 SCOP2B (2022-06-29)
DA [auth f]SCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8095299 3000813 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyElectron transport accessory proteins 8093902 3000325 SCOP2B (2022-06-29)
ESCOP2 FamilyPhotosystem I accessory protein E (PsaE) 8093901 4001749 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyElectron transport accessory proteins 8093902 3000325 SCOP2 (2022-06-29)
CA [auth e]SCOP2B SuperfamilyElectron transport accessory proteins 8093902 3000325 SCOP2B (2022-06-29)
BA [auth d]SCOP2B SuperfamilyPhotosystem I subunit PsaD 8094705 3000951 SCOP2B (2022-06-29)
OSCOP2 FamilyPhotosystem I subunit PsaD 8094704 4003498 SCOP2 (2022-06-29)
OSCOP2 SuperfamilyPhotosystem I subunit PsaD 8094705 3000951 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8094705 3000951 SCOP2B (2022-06-29)
NSCOP2 Family7-Fe ferredoxin 8093753 4001227 SCOP2 (2022-06-29)
NSCOP2 Superfamily4Fe-4S ferredoxins 8093754 3000020 SCOP2 (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8093754 3000020 SCOP2B (2022-06-29)
AA [auth c]SCOP2B Superfamily4Fe-4S ferredoxins 8093754 3000020 SCOP2B (2022-06-29)
Z [auth b]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB 8093899 4002118 SCOP2 (2022-06-29)
Z [auth b]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB 8093900 3000850 SCOP2 (2022-06-29)
HSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8093900 3000850 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8093900 3000850 SCOP2B (2022-06-29)
XSCOP2B SuperfamilySubunit PsaX of photosystem I reaction centre 8094529 3000838 SCOP2B (2022-06-29)
WSCOP2 FamilySubunit PsaX of photosystem I reaction centre 8094528 4002108 SCOP2 (2022-06-29)
WSCOP2 SuperfamilySubunit PsaX of photosystem I reaction centre 8094529 3000838 SCOP2 (2022-06-29)
JA [auth x]SCOP2B SuperfamilySubunit PsaX of photosystem I reaction centre 8094529 3000838 SCOP2B (2022-06-29)
IA [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8094052 3000829 SCOP2B (2022-06-29)
MSCOP2 FamilySubunit XII of photosystem I reaction centre, PsaM 8094051 4002104 SCOP2 (2022-06-29)
MSCOP2 SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8094052 3000829 SCOP2 (2022-06-29)
VSCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8094052 3000829 SCOP2B (2022-06-29)
USCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8094158 3000870 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8094158 3000870 SCOP2B (2022-06-29)
HA [auth l]SCOP2 FamilyPhotosystem I reaction center subunit XI, PsaL 8094157 4002135 SCOP2 (2022-06-29)
HA [auth l]SCOP2 SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8094158 3000870 SCOP2 (2022-06-29)
ASCOP2 FamilyPhotosystem I subunits PsaA/PsaB 8094526 4002118 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB 8094527 3000850 SCOP2 (2022-06-29)
Y [auth a]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094527 3000850 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094527 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
SPrgHe6pnjS1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
JPrgHe6pnjJ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
FA [auth j]PrgHe6pnjj1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
EA [auth i]PrgHe6pnji1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
RPrgHe6pnjR1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
IPrgHe6pnjI1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
QPrgHe6pnjQ1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
FPrgHe6pnjF1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
DA [auth f]PrgHe6pnjf1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
PPrgHe6pnjP1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
EPrgHe6pnjE1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
CA [auth e]PrgHe6pnje1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
BA [auth d]PrgHe6pnjd1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
OPrgHe6pnjO1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
DPrgHe6pnjD1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
NPrgHe6pnjN1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
CPrgHe6pnjC1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
AA [auth c]PrgHe6pnjc1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
Z [auth b]PrgHe6pnjb1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
HPrgHe6pnjH1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
BPrgHe6pnjB1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
XPrgHe6pnjX1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
WPrgHe6pnjW1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
JA [auth x]PrgHe6pnjx1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
IA [auth m]PrgHe6pnjm1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
MPrgHe6pnjM1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
VPrgHe6pnjV1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
UPrgHe6pnjU1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
LPrgHe6pnjL1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
HA [auth l]PrgHe6pnjl1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
APrgHe6pnjA1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
Y [auth a]PrgHe6pnja1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)
GPrgHe6pnjG1 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: beta-sandwich domain in metalloprotease stcET: beta-sandwich domain in metalloprotease stcEF: PrgHECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
S1.20.5.510 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (utative)
J1.20.5.510 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (utative)
FA [auth j]1.20.5.510 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (utative)
Q1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
F1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
DA [auth f]1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
P2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (utative)
E2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (utative)
CA [auth e]2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (utative)
BA [auth d]3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (utative)
O3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (utative)
D3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (utative)
N3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
C3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
AA [auth c]3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
Z [auth b]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
H1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
B1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
U1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (utative)
L1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (utative)
HA [auth l]1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (utative)
A1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
Y [auth a]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
G1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
GA [auth k],
K,
T
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
FA [auth j],
J,
S
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
DA [auth f],
F,
Q
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
CA [auth e],
E,
P
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
BA [auth d],
D,
O
PF02531PsaD (PsaD)PsaD- Family
AA [auth c],
C,
N
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
B,
H,
Z [auth b]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
IA [auth m],
M,
V
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
HA [auth l],
L,
U
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
A,
G,
Y [auth a]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
GA [auth k],
K,
T
photosystem I reaction center subunit PsaK-
FA [auth j],
J,
S
Photosystem I reaction centre subunit IX / PsaJ-
EA [auth i],
I,
R
photosystem I subunit VIII---
DA [auth f],
F,
Q
Photosystem I reaction center protein PsaF subunit III-
CA [auth e],
E,
P
Photosystem I reaction center subunit IV-
BA [auth d],
D,
O
Photosystem I protein PsaD-
AA [auth c],
C,
N
Photosystem I iron-sulfur center
B,
H,
Z [auth b]
Photosystem I P700 chlorophyll a apoprotein A2
JA [auth x],
W,
X
Photosystem one PsaX- - -
IA [auth m],
M,
V
Photosystem I reaction center subunit XII-
HA [auth l],
L,
U
Photosystem I reaction center protein subunit XI-
A,
G,
Y [auth a]
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
GA [auth k],
K,
T
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
GA [auth k],
K,
T
IPR000549Photosystem I reaction center subunit V/PsaKFamily
GA [auth k],
K,
T
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
GA [auth k],
K,
T
IPR017492Photosystem I reaction center subunit PsaKFamily
FA [auth j],
J,
S
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
FA [auth j],
J,
S
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
DA [auth f],
F,
Q
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
DA [auth f],
F,
Q
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
CA [auth e],
E,
P
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
CA [auth e],
E,
P
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
BA [auth d],
D,
O
IPR003685Photosystem I PsaDFamily
BA [auth d],
D,
O
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
AA [auth c],
C,
N
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
AA [auth c],
C,
N
IPR050157Photosystem I iron-sulfur centerFamily
AA [auth c],
C,
N
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
AA [auth c],
C,
N
IPR017491Photosystem I protein PsaCFamily
B,
H,
Z [auth b]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B,
H,
Z [auth b]
IPR001280Photosystem I PsaA/PsaBFamily
B,
H,
Z [auth b]
IPR006244Photosystem I PsaBFamily
B,
H,
Z [auth b]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
JA [auth x],
W,
X
IPR036243Photosystem I PsaX superfamilyHomologous Superfamily
JA [auth x],
W,
X
IPR012986Photosystem I PsaXFamily
IA [auth m],
M,
V
IPR010010Photosystem I PsaM, reaction centreFamily
IA [auth m],
M,
V
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
HA [auth l],
L,
U
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
HA [auth l],
L,
U
IPR022980Photosystem I, reaction centre subunit XIFamily
HA [auth l],
L,
U
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
A,
G,
Y [auth a]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A,
G,
Y [auth a]
IPR001280Photosystem I PsaA/PsaBFamily
A,
G,
Y [auth a]
IPR006243Photosystem I PsaAFamily
A,
G,
Y [auth a]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site