Structure of Photosystem I Acclimated to Far-red Light
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Q | SCOP2 Family | Subunit III of photosystem I reaction centre, PsaF | 8095298 | 4002091 | SCOP2 (2022-06-29) |
| Q | SCOP2 Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8095299 | 3000813 | SCOP2 (2022-06-29) |
| F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8095299 | 3000813 | SCOP2B (2022-06-29) |
| DA [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8095299 | 3000813 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2B (2022-06-29) |
| E | SCOP2 Family | Photosystem I accessory protein E (PsaE) | 8093901 | 4001749 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2 (2022-06-29) |
| CA [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2B (2022-06-29) |
| BA [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2B (2022-06-29) |
| O | SCOP2 Family | Photosystem I subunit PsaD | 8094704 | 4003498 | SCOP2 (2022-06-29) |
| O | SCOP2 Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2 (2022-06-29) |
| D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2B (2022-06-29) |
| N | SCOP2 Family | 7-Fe ferredoxin | 8093753 | 4001227 | SCOP2 (2022-06-29) |
| N | SCOP2 Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2 (2022-06-29) |
| C | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2B (2022-06-29) |
| AA [auth c] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2B (2022-06-29) |
| Z [auth b] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8093899 | 4002118 | SCOP2 (2022-06-29) |
| Z [auth b] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2 (2022-06-29) |
| H | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2B (2022-06-29) |
| W | SCOP2 Family | Subunit PsaX of photosystem I reaction centre | 8094528 | 4002108 | SCOP2 (2022-06-29) |
| W | SCOP2 Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2 (2022-06-29) |
| JA [auth x] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2B (2022-06-29) |
| IA [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094052 | 3000829 | SCOP2B (2022-06-29) |
| M | SCOP2 Family | Subunit XII of photosystem I reaction centre, PsaM | 8094051 | 4002104 | SCOP2 (2022-06-29) |
| M | SCOP2 Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094052 | 3000829 | SCOP2 (2022-06-29) |
| V | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094052 | 3000829 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8094158 | 3000870 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8094158 | 3000870 | SCOP2B (2022-06-29) |
| HA [auth l] | SCOP2 Family | Photosystem I reaction center subunit XI, PsaL | 8094157 | 4002135 | SCOP2 (2022-06-29) |
| HA [auth l] | SCOP2 Superfamily | Photosystem I reaction center subunit XI, PsaL | 8094158 | 3000870 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8094526 | 4002118 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2 (2022-06-29) |
| Y [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| S | PrgH | e6pnjS1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| J | PrgH | e6pnjJ1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| FA [auth j] | PrgH | e6pnjj1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| EA [auth i] | PrgH | e6pnji1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| R | PrgH | e6pnjR1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| I | PrgH | e6pnjI1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| Q | PrgH | e6pnjQ1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| F | PrgH | e6pnjF1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| DA [auth f] | PrgH | e6pnjf1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| P | PrgH | e6pnjP1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| E | PrgH | e6pnjE1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| CA [auth e] | PrgH | e6pnje1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| BA [auth d] | PrgH | e6pnjd1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| O | PrgH | e6pnjO1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| D | PrgH | e6pnjD1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| N | PrgH | e6pnjN1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| C | PrgH | e6pnjC1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| AA [auth c] | PrgH | e6pnjc1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| Z [auth b] | PrgH | e6pnjb1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| H | PrgH | e6pnjH1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| B | PrgH | e6pnjB1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| X | PrgH | e6pnjX1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| W | PrgH | e6pnjW1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| JA [auth x] | PrgH | e6pnjx1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| IA [auth m] | PrgH | e6pnjm1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| M | PrgH | e6pnjM1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| V | PrgH | e6pnjV1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| U | PrgH | e6pnjU1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| L | PrgH | e6pnjL1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| HA [auth l] | PrgH | e6pnjl1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| A | PrgH | e6pnjA1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| Y [auth a] | PrgH | e6pnja1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
| G | PrgH | e6pnjG1 | A: a/b three-layered sandwiches | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: beta-sandwich domain in metalloprotease stcE | F: PrgH | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| GA [auth k], K, T | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
| FA [auth j], J, S | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
| DA [auth f], F, Q | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
| CA [auth e], E, P | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
| BA [auth d], D, O | PF02531 | PsaD (PsaD) | PsaD | - | Family |
| AA [auth c], C, N | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
| B, H, Z [auth b] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
| IA [auth m], M, V | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
| HA [auth l], L, U | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
| A, G, Y [auth a] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |














