6PIJ | pdb_00006pij

Target DNA-bound V. cholerae TniQ-Cascade complex, closed conformation

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BUNK_F_TYPEe6pijB1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: UNK_F_TYPEECOD (1.6)
FUNK_F_TYPEe6pijF1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: UNK_F_TYPEECOD (1.6)
EUNK_F_TYPEe6pijE1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: UNK_F_TYPEECOD (1.6)
DUNK_F_TYPEe6pijD1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: UNK_F_TYPEECOD (1.6)
CUNK_F_TYPEe6pijC1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: UNK_F_TYPEECOD (1.6)
AUNK_F_TYPEe6pijA1 A: a+b two layersX: Alpha-beta plaitsH: Cas7-relatedT: CRISPR-associated protein Cas7f/Csy3F: UNK_F_TYPEECOD (1.6)
HCas_Csy4_Ce6pijH1 A: a+b two layersX: Alpha-beta plaitsH: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)T: CRISPR transcript (pre-crRNA) processing endoribonuclease-relatedF: Cas_Csy4_CECOD (1.6)
HCas_Csy4_Ne6pijH2 A: a+b two layersX: Alpha-beta plaitsH: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)T: CRISPR transcript (pre-crRNA) processing endoribonuclease-relatedF: Cas_Csy4_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF09615CRISPR-associated protein (Cas_Csy3) (Cas_Csy3)CRISPR-associated protein (Cas_Csy3)- Family
PF06527TniQ (TniQ)TniQ- Family
PF06527TniQ (TniQ)TniQ- Family
PF09618CRISPR-associated protein (Cas_Csy4) (Cas_Csy4)CRISPR-associated protein (Cas_Csy4)- Family
PF09614CRISPR-associated protein (Cas_Csy2) (Cas_Csy2)CRISPR-associated protein (Cas_Csy2)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
cas7 type I-F CRISPR-associated protein Csy3- - -
M [auth 3]Non-targeting strand ssDNA---
L [auth 2]Targeting strand ssDNA---
K [auth 1]guide RNA---
TniQ monomer 2- - -
TniQ monomer I- - -
type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
cas5_8 naturally occurring fusion protein- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR013399Type I-F CRISPR-associated protein Csy3Family
IPR009492TniQDomain
IPR009492TniQDomain
IPR013396CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPESTFamily
IPR042564CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST superfamilyHomologous Superfamily
IPR013398Type I-F CRISPR-associated protein Csy2Family