6PI7
Crystal structure of the TDRD2 extended Tudor domain in complex with an antibody fragment and the PIWIL1 peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG2279 | e6pi7A1 | A: beta barrels | X: OB-fold | H: Staphylococcal nuclease (From Topology) | T: Staphylococcal nuclease | F: KOG2279 | ECOD (1.6) |
A | TUDOR | e6pi7A2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TUDOR | ECOD (1.6) |
D | KOG2279 | e6pi7D2 | A: beta barrels | X: OB-fold | H: Staphylococcal nuclease (From Topology) | T: Staphylococcal nuclease | F: KOG2279 | ECOD (1.6) |
D | TUDOR | e6pi7D1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: TUDOR | ECOD (1.6) |
B | C1-set_4 | e6pi7B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B | V-set | e6pi7B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E | C1-set_4 | e6pi7E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
E | V-set | e6pi7E2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C | V-set_8 | e6pi7C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C | C1-set_1 | e6pi7C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
F | V-set_8 | e6pi7F2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
F | C1-set_1 | e6pi7F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Antibody Fab Fragment | L-KAPPA | Homo sapiens (human) | IGKV1D-13*01, IGKV1-13*02, IGKV1D-13*02, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) | |
Antibody Fab Fragment | VH-CH1 | Homo sapiens (human) | IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Light Chain | IGKV1 | Kappa | tudor and kh domain-containing protein | SAbDab (2024-09-13) | |
Heavy Chain | IGHV3 | - | tudor and kh domain-containing protein | SAbDab (2024-09-13) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002999 | Tudor domain | Domain | |
IPR035437 | SNase-like, OB-fold superfamily | Homologous Superfamily | |
IPR004087 | K Homology domain | Domain | |
IPR047382 | Tudor and KH domain-containing protein, first type I K homology domain | Domain | |
IPR047381 | Tudor and KH domain-containing protein, second type I K homology domain | Domain | |
IPR036612 | K Homology domain, type 1 superfamily | Homologous Superfamily | |
IPR047380 | Tudor domain-containing protein 2-like, tudor domain | Domain | |
IPR050621 | Tudor domain-containing | Family | |
IPR004088 | K Homology domain, type 1 | Domain | |
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR014811 | Argonaute, linker 1 domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR031320 | GAGE | Domain | |
IPR003100 | PAZ domain | Domain | |
IPR036085 | PAZ domain superfamily | Homologous Superfamily | |
IPR003165 | Piwi domain | Domain |