Structure of S. venezuelae RisG-WhiG-c-di-GMP complex: orthorhombic crystal form
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth G] | Sigma70_r3 | e6pfvG3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Sigma70_r3 | ECOD (1.6) |
| F [auth G] | Sigma70_r4_2 | e6pfvG1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Sigma70_r4_2 | ECOD (1.6) |
| F [auth G] | Sigma70_r2_2 | e6pfvG2 | A: alpha complex topology | X: Sigma2 domain-like | H: Sigma2 domain of RNA polymerase sigma factors (From Topology) | T: Sigma2 domain of RNA polymerase sigma factors | F: Sigma70_r2_2 | ECOD (1.6) |
| D | Sigma70_r3 | e6pfvD2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Sigma70_r3 | ECOD (1.6) |
| D | Sigma70_r4_2 | e6pfvD3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Sigma70_r4_2 | ECOD (1.6) |
| D | Sigma70_r2_2 | e6pfvD1 | A: alpha complex topology | X: Sigma2 domain-like | H: Sigma2 domain of RNA polymerase sigma factors (From Topology) | T: Sigma2 domain of RNA polymerase sigma factors | F: Sigma70_r2_2 | ECOD (1.6) |
| B [auth A] | Sigma70_r3 | e6pfvA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Sigma70_r3 | ECOD (1.6) |
| B [auth A] | Sigma70_r4_2 | e6pfvA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Sigma70_r4_2 | ECOD (1.6) |
| B [auth A] | Sigma70_r2_2 | e6pfvA1 | A: alpha complex topology | X: Sigma2 domain-like | H: Sigma2 domain of RNA polymerase sigma factors (From Topology) | T: Sigma2 domain of RNA polymerase sigma factors | F: Sigma70_r2_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth T], C [auth B], E | PF22802 | RsiG-like (RsiG) | RsiG-like | This entry represents a domain found in homologues of RsiG protein from Streptomyces. This domain adopts an alpha-helix and in Streptomyces self associates to form a dimer. This dimer binds c-di-GMP via two E(X)3-S(X)2-R(X)3-Q(X)-D repeat motifs, one ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| B [auth A], D, F [auth G] | RNA polymerase sigma factor | - | - | - |
| A [auth T], C [auth B], E | AmfC protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth T], C [auth B], E | IPR049575 | Anti-sigma factor RsiG/AmfC-like | Family |
| A [auth T], C [auth B], E | IPR055209 | RsiG-like domain | Domain |














