6PE5 | pdb_00006pe5

Yeast Vo motor in complex with 2 VopQ molecules


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth P]Rhodanesee6pe5P1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
N [auth O]Rhodanesee6pe5O1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
M [auth N]Rhodanesee6pe5N1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
L [auth M]Rhodanesee6pe5M1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
K [auth L]Rhodanesee6pe5L1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
J [auth K]Rhodanesee6pe5K1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
I [auth J]Rhodanesee6pe5J1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
H [auth I]Rhodanesee6pe5I1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
G [auth H]Rhodanesee6pe5H1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)
C [auth D]Rhodanesee6pe5D1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: RhodaneseECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
G [auth H]PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
F [auth G]PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain
D [auth E]PF05493ATP synthase subunit H (ATP_synt_H)ATP synthase subunit H- Family
C [auth D]PF01992ATP synthase (C/AC39) subunit (vATP-synt_AC39)ATP synthase (C/AC39) subunit- Family
PF20520V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM)V0 complex accessory subunit Ac45/VOA1 transmembrane domainThis entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ...This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) which are essential for V0 ATPase assembly, stability and function [1,2]. In humans, mutations of ATP6AP1 cause immunodeficiency with hypogammaglobulinemia, hepatopathy and neurocognitive abnormalities [3]. This entry also includes ER membrane BIG1 proteins from yeast, involved in cell wall biogenesis.
Domain
PF01496V-type ATPase 116kDa subunit family (V_ATPase_I)V-type ATPase 116kDa subunit family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
P [auth Q],
Q [auth R]
Cation transporter---
V-type proton ATPase subunit c
G [auth H]V-type proton ATPase subunit c'
F [auth G]V-type proton ATPase subunit c''
E [auth F]Uncharacterized protein YPR170W-B
D [auth E]V-type proton ATPase subunit e
C [auth D]V-type proton ATPase subunit d
V0 assembly protein 1
V-type proton ATPase subunit a, vacuolar isoform

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR011555V-ATPase proteolipid subunit C, eukaryoticFamily
IPR000245V-ATPase proteolipid subunitFamily
G [auth H]IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
G [auth H]IPR002379V-ATPase proteolipid subunit C-like domainDomain
G [auth H]IPR011555V-ATPase proteolipid subunit C, eukaryoticFamily
G [auth H]IPR000245V-ATPase proteolipid subunitFamily
F [auth G]IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
F [auth G]IPR002379V-ATPase proteolipid subunit C-like domainDomain
F [auth G]IPR000245V-ATPase proteolipid subunitFamily
E [auth F]IPR056552Ribonucl_KappaUnknown
E [auth F]IPR026770Ribonuclease kappaFamily
D [auth E]IPR008389ATPase, V0 complex, subunit e1/e2Family
C [auth D]IPR044911V-type ATP synthase C/D subunit, domain 3 superfamilyHomologous Superfamily
C [auth D]IPR002843ATPase, V0 complex, C/D subunitFamily
C [auth D]IPR036079V-type ATP synthase subunit C/D subunit superfamilyHomologous Superfamily
C [auth D]IPR035067V-type ATPase subunit C/DHomologous Superfamily
C [auth D]IPR016727ATPase, V0 complex, subunit DFamily
IPR046756V-type proton ATPase subunit S1/VOA1, transmembrane domainDomain
IPR026028ATPase, V0 complex, subunit 116kDa, eukaryoticFamily
IPR002490V-type ATPase, V0 complex, 116kDa subunit familyFamily