6PCI | pdb_00006pci

EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs

External Resource: Annotation

Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R [auth P]	Pico_P1A	e6pciP1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
L [auth O]	Pico_P1A	e6pciO1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
F [auth N]	Pico_P1A	e6pciN1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
Q [auth S]	Pico_P1A	e6pciS1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
K [auth R]	Pico_P1A	e6pciR1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
E [auth Q]	Pico_P1A	e6pciQ1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
P [auth F]	Pico_P1A	e6pciF1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
J [auth E]	Pico_P1A	e6pciE1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
D	Pico_P1A	e6pciD1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
C [auth K]	Pico_P1A	e6pciK1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
O [auth M]	Pico_P1A	e6pciM1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
I [auth L]	Pico_P1A	e6pciL1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
N [auth J]	Pico_P1A	e6pciJ1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
H [auth I]	Pico_P1A	e6pciI1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
B [auth H]	Pico_P1A	e6pciH1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
M [auth C]	Pico_P1A	e6pciC1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
G [auth B]	Pico_P1A	e6pciB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)
A	Pico_P1A	e6pciA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: Pico_P1A	ECOD (v294.1)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
F [auth N], L [auth O], R [auth P]	mAb rEBOV-520, neutralization	VH-CH1	Homo sapiens (human)	IGHV4-408, IGHJ101, IGHE01, IGHE02, IGHE03, IGHE04	V-DOMAIN VH, C-DOMAIN CH2	IG	(VH-C-BETA-2-CH1)	IMGT (202613-0)
E [auth Q], K [auth R], Q [auth S]	mAb rEBOV-520, neutralization	L-KAPPA	Homo sapiens (human)	IGKV3-2001, IGKJ201, IGKC*01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	(VH-C-BETA-2-CH1)	IMGT (202613-0)
C [auth K], I [auth L], O [auth M]	mAb rEBOV-548, neutralization	L-KAPPA	Homo sapiens (human)	IGKV1-1201, IGKV1-1202, IGKV1D-1201, IGKV1D-1202, IGKJ201, IGKC01	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	(VH-C-BETA-2-CH1)	IMGT (202613-0)
B [auth H], H [auth I], N [auth J]	mAb rEBOV-548, neutralization	1C-LIKE	Homo sapiens (human)	IGHV3-3002, IGHV3-30-502, IGHE01, IGHE02, IGHE03, IGHE04	V-DOMAIN VH, C-DOMAIN CH2	IG	(VH-C-BETA-2-CH1)	IMGT (202613-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
F [auth N], L [auth O], R [auth P]	Heavy Chain	IGHV4	-	virion spike glycoprotein \| virion spike glycoprotein,virion spike glycoprotein,ebolavirus (makona) gp2	SAbDab (2026-04-10)
E [auth Q], K [auth R], Q [auth S]	Light Chain	IGKV3	Kappa	virion spike glycoprotein \| virion spike glycoprotein,virion spike glycoprotein,ebolavirus (makona) gp2	SAbDab (2026-04-10)
C [auth K], I [auth L], O [auth M]	Light Chain	IGKV1	Kappa	virion spike glycoprotein	SAbDab (2026-04-10)
B [auth H], H [auth I], N [auth J]	Heavy Chain	IGHV3	-	virion spike glycoprotein	SAbDab (2026-04-10)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth N], L [auth O], R [auth P]	rEBOV-520 Fab heavy chain	-	-	-
E [auth Q], K [auth R], Q [auth S]	rEBOV-520 Fab light chain	-	-	-
D, J [auth E], P [auth F]	Virion spike glycoprotein,Virion spike glycoprotein,Ebola Virus (Makona) GP2	binding lipid binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated-mediated suppression of host tetherin activity modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral life cycle viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated-mediated suppression of host tetherin activity modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral life cycle establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	virion component virion membrane cellular anatomical structure extracellular region viral membrane viral envelope host cell plasma membrane host cellular component host cell part host cell membrane other organism part
C [auth K], I [auth L], O [auth M]	rEBOV-548 Fab light chain	-	-	-
B [auth H], H [auth I], N [auth J]	rEBOV-548 Fab heavy chain	-	-	-
A, G [auth B], M [auth C]	Virion spike glycoprotein	binding lipid binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated-mediated suppression of host tetherin activity modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral life cycle viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host defense response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated-mediated suppression of host tetherin activity modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport viral life cycle establishment of localization vesicle-mediated transport localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host immune response symbiont-mediated perturbation of host innate immune response virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	virion component virion membrane cellular anatomical structure extracellular region viral membrane viral envelope host cell plasma membrane host cellular component host cell part host cell membrane other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, J [auth E], P [auth F]	IPR014625	Filoviruses glycoprotein	Family
D, J [auth E], P [auth F]	IPR002561	Filoviruses glycoprotein, extracellular domain	Domain
D, J [auth E], P [auth F]	IPR054584	Envelope glycoprotein GP2-like, HR1-HR2	Domain
A, G [auth B], M [auth C]	IPR014625	Filoviruses glycoprotein	Family
A, G [auth B], M [auth C]	IPR002561	Filoviruses glycoprotein, extracellular domain	Domain
A, G [auth B], M [auth C]	IPR054584	Envelope glycoprotein GP2-like, HR1-HR2	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.