6P0X | pdb_00006p0x

Structure of the N-terminal domain of effector protein SpvB from Salmonella typhimurium strain LT2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Effector protein SpvB, N-terminal domain-like	8102234	3002724	SCOP2B (2022-06-29)
A	SCOP2 Family	NTD-SpvB-like	8102229	4007457	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Effector protein SpvB, N-terminal domain-like	8102234	3002724	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SpvB	e6p0xB1	A: beta meanders	X: Rearrangement hotspot (RHS) repeats protein (From Topology)	H: Rearrangement hotspot (RHS) repeats protein (From Topology)	T: Rearrangement hotspot (RHS) repeats protein	F: SpvB	ECOD (1.6)
A	SpvB	e6p0xA1	A: beta meanders	X: Rearrangement hotspot (RHS) repeats protein (From Topology)	H: Rearrangement hotspot (RHS) repeats protein (From Topology)	T: Rearrangement hotspot (RHS) repeats protein	F: SpvB	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Salmonella plasmid virulence: SpvB	pentosyltransferase activity NAD+-protein-arginine ADP-ribosyltransferase activity catalytic activity, acting on a protein glycosyltransferase activity transferase activity NAD+-protein mono-ADP-ribosyltransferase activity catalytic activity toxin activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR003540	ADP ribosyltransferase	Domain
A, B	IPR003284	Salmonella virulence plasmid 65kDa B protein	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.