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 6P08 | pdb_00006p08

Ternary structure of the E52D mutant of ANT-4'' with Neomycin, AMP and Pyrophosphate

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth D]d6p08d2 All alpha proteins Four-helical up-and-down bundle Nucleotidyltransferase substrate binding subunit/domain Kanamycin nucleotidyltransferase (KNTase), C-terminal domain automated matches (Bacillus sp. (in: firmicutes) ) [TaxId: 1409 ], SCOPe (2.08)
B [auth D]d6p08d1 Alpha and beta proteins (a+b) Nucleotidyltransferase Nucleotidyltransferase Kanamycin nucleotidyltransferase (KNTase), N-terminal domain automated matches (Bacillus sp. (in: firmicutes) ) [TaxId: 1409 ], SCOPe (2.08)
Ad6p08a2 All alpha proteins Four-helical up-and-down bundle Nucleotidyltransferase substrate binding subunit/domain Kanamycin nucleotidyltransferase (KNTase), C-terminal domain automated matches (Bacillus sp. (in: firmicutes) ) [TaxId: 1409 ], SCOPe (2.08)
Ad6p08a1 Alpha and beta proteins (a+b) Nucleotidyltransferase Nucleotidyltransferase Kanamycin nucleotidyltransferase (KNTase), N-terminal domain automated matches (Bacillus sp. (in: firmicutes) ) [TaxId: 1409 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth D]SCOP2B SuperfamilyNucleotidyltransferase-like 8042135 3000129 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyHEPN domain-like 8042134 3000904 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNucleotidyltransferase-like 8042135 3000129 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyHEPN domain-like 8042134 3000904 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth D]e6p08D1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)
Ae6p08A1 A: alpha arraysX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat)T: Acyl-CoA N-acyltransferases (Nat)F:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth D]3.30.460.10 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
B [auth D]1.20.120.330 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Nucleotidyltransferases domain 2CATH (utative)
A3.30.460.10 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
A1.20.120.330 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) Nucleotidyltransferases domain 2CATH (utative)

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
A,
B [auth D]		ARO:3002623ANT(4')-IaANT(4')-Ia is a plasmid-encoded aminoglycoside nucleotidyltransferase in S. epidermidis, S. aureus, Enterococcus spp. and Bacillus spp.CARD (4.0.2)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
A,
B [auth D]		ARO:3000229ANT(4')aminoglycoside antibioticantibiotic inactivationCARD (4.0.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B [auth D]		Kanamycin nucleotidyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B [auth D]		IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
A,
B [auth D]		IPR012481Kanamycin nucleotidyltransferase, C-terminalDomain