6OWO | pdb_00006owo

CRYO-EM STRUCTURE OF PHOSPHORYLATED AP-2 CORE BOUND TO NECAP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth N]SCOP2B SuperfamilyPH domain-like 8094487 3000134 SCOP2B (2022-06-29)
D [auth S]SCOP2B SuperfamilySNARE-like 8093628 3001113 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyARM repeat-like 8093672 3000116 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth N]MAM33e6owoN1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MAM33ECOD (v294.1)
D [auth S]MAM33e6owoS1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MAM33ECOD (v294.1)
C [auth M]V-sete6owoM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
BMAM33e6owoB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: MAM33ECOD (v294.1)
AV-sete6owoA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth S]PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
C [auth M]PF00928Adaptor complexes medium subunit family (Adap_comp_sub)Adaptor complexes medium subunit family- Family
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth N]Adaptin ear-binding coat-associated protein 2-
D [auth S]AP-2 complex subunit sigma
C [auth M]AP-2 complex subunit mu
AP-2 complex subunit beta
AP-2 complex subunit alpha-2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth N]IPR012466NECAP, PHear domainDomain
E [auth N]IPR011993PH-like domain superfamilyHomologous Superfamily
D [auth S]IPR016635Adaptor protein complex, sigma subunitFamily
D [auth S]IPR011012Longin-like domain superfamilyHomologous Superfamily
D [auth S]IPR000804Clathrin adaptor complex, small chainConserved Site
D [auth S]IPR022775AP complex, mu/sigma subunitDomain
D [auth S]IPR027156AP-2 complex subunit sigmaFamily
C [auth M]IPR043512Mu2, C-terminal domainDomain
C [auth M]IPR050431Adaptor complexes medium subunitFamily
C [auth M]IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
C [auth M]IPR028565Mu homology domainDomain
C [auth M]IPR018240Clathrin adaptor, mu subunit, conserved siteConserved Site
C [auth M]IPR001392Clathrin adaptor, mu subunitFamily
C [auth M]IPR011012Longin-like domain superfamilyHomologous Superfamily
C [auth M]IPR043532AP-2 complex subunit mu, N-terminalDomain
C [auth M]IPR022775AP complex, mu/sigma subunitDomain
IPR016024Armadillo-type foldHomologous Superfamily
IPR013037Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomainHomologous Superfamily
IPR000225ArmadilloRepeat
IPR026739AP complex subunit betaFamily
IPR011989Armadillo-like helicalHomologous Superfamily
IPR012295TBP domain superfamilyHomologous Superfamily
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
IPR015151Beta-adaptin appendage, C-terminal subdomainDomain
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
IPR016342AP-1/2/4 complex subunit betaFamily
IPR016024Armadillo-type foldHomologous Superfamily
IPR003164Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR012295TBP domain superfamilyHomologous Superfamily
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
IPR050840Adaptor Complexes Large SubunitFamily
IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
IPR017104Adaptor protein complex AP-2, alpha subunitFamily
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C [auth M]TPO Parent Component: THR

RESIDAA0038

PSI-MOD :  O-phospho-L-threonine MOD:00047